PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004096G0180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 1072aa    MW: 118661 Da    PI: 6.5635
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004096G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.97.2e-1543734878
                     SEEETTT--SS--S-STTTT-------S--- CS
              SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                      fh lsefDe+krsCrrrLa+hn+rrrk+q+
  PH01004096G0180 43 PFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 73
                     6***************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.614171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.9E-114274IPR004333Transcription factor, SBP-box
PfamPF031102.0E-84370IPR004333Transcription factor, SBP-box
SuperFamilySSF484039.72E-6723789IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.1E-5726789IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.1E-5895955IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.72E-6895960IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1072 aa     Download sequence    Send to blast
MQREVGPQLA PPLFMHQIQP LHPHAAAEKK RGHPWPAGAA VAPFHPLSEF DEGKRSCRRR  60
LAGHNRRRRK TQPTDVASQL LLPGNQENAA SRTQDIVNLI TVIARLQGSN VGKLPSVPPI  120
PDKDNLVQII SKINSMNNAN SVAKSPPSEV VDLNASHGQQ EDSVQKTTNG IDKQTVPTMD  180
LLAVLSTALA ASTPETNTSQ SQGSSDSSGN NKSKSHSTEP ASVVNSHEKS IRVFAAAGMI  240
RSNSTQESPP EIYKQSDREP YLSLQLFGST EEDIPPKMDT ANKYLSSESS NPLDEISPSS  300
SPPITHKFFP IRSVAEDIRH PHIADYGEDA GTVEVSTSRA WCAPPLELSK DSERPIENGS  360
PPNPAYQSCY ASTSCSEHSP STSNSDGQDR TGRIIFKLFG KEPGTVPGNL RDEIVNWLKH  420
SPSEMEGYIR PGCLVLSMYL SMPAIAWDEL EENLLQRVNT LVQSSDLDFW RKGRFLVRTD  480
TQLVSYKDGM TRLSKSWRTW NTPELTFVSP IAVVGGRKTS LVLKGRNLTI PGTQIHCTST  540
GKYISKEVLC SAYPGTIYDD SGVETFDLPG EPHLIIGRCF IEVENRFRGN SFPVIVANSS  600
VCEELRNLEA ELEDSQFFDV SSDDQVHDAR RLKPRDHVLH FLNELGWLFQ KAAACTPSTK  660
SDISDSDLIQ FSTARFKYLL LFSNERDWCS LTKALLDILA KRSLVSDELS QETLEMLSEI  720
HLLNRAVKRK SSRMVHLLVQ FVVICPDNSR LYPFLPNLPG PGGLTPLHLA ASIDDAEDIV  780
DALTDDPQQK AAACTPSTKS DISDSDLIQF STARFKYLLL FSNERDWCSL SKTLLDILAK  840
RSLVSDELSQ ETLEMLSEIH LLNRAVKRRS SRMVHSLVQF VVICPDNSRL YPFLPNLPGP  900
GGLTPLHLAA SIDDAEDIVD ALTDDPQQIG LICWHSVLDD NGQSPETYAK LRNNHSYNEL  960
VAQKLVDRKN SQVTIMVNKE EIRVDAGNVG ENNTSGIQAL QIRSCSQCAT LESGRLLRRP  1020
LHSRGLLARP YIHSMLAIAA VCVCVCVFMR ALLRFNSGRS FKWDRLHFGT I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1863868RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004096G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179484.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A3Q8B3840.0A0A3Q8B384_9POAL; Squamosa-promoter binding protein-like protein
STRINGMLOC_4792.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.11e-154squamosa promoter binding protein-like 14