PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003146G0100

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 707aa MW: 78388.1 Da PI: 6.1921

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003146G0100	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	308.5	1.6e-94	346	697	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cA+avs++d + a++lL++++ +sp+gd+ qRla+yf+eAL+arla+++s+ly++l +++ts +++ l+a++lf ++ + k+++ PH01003146G0100 346 HTLLLHCAQAVSTDDSRSASELLKQIKRSSSPRGDAAQRLAHYFAEALEARLAGTGSQLYQSLMVKRTS---VVDFLKAYQLFMAACCCKKVAF 436 679*************************************************************999...****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 N++I++av+g +r+Hi+D+++++G+QWp Ll+ LasR++gpp eetg+rL + A++lgvpf+f+ +a + e++ PH01003146G0100 437 TFSNKTIYDAVAGRSRLHIVDYGLNYGFQWPGLLRGLASREGGPP------------------EETGRRLGNCAQQLGVPFKFHG-IAAKRETV 511 ***************************************98..................58****************.69999* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++e+L+++++E+l+V++ + +l+de++ +s +rd++L+ +++++P+v+++ + +++s+ Fl+rf e l +y+a fd lea++pr+s+e PH01003146G0100 512 RPEDLNIDRDEVLVVSSLCHFRHLMDENLVFDSpsPRDQILENIRKMRPDVFIHGIVNGSYGSAYFLTRFREVLFHYAAQFDLLEATVPRDSDE 605 **************************98877779****************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r vEr ++gr++ nv+acega+r+er et+++W+ r ++aG++++pl+ +++k + ++ + + + v+ + +l+ Wk+r L+++S W PH01003146G0100 606 RLLVERDMFGRAALNVIACEGADRVERPETYKQWQVRNHRAGLTQLPLKPDVVKVVLDKVKDNYHKDFVVDGDGRWLLHRWKGRVLYALSTW 697 ***********************************************************9888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.285	319	678	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-92	346	697	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MATTPEEFLR EGILVRPEPP SPSVFLDLPP TPHGDAEDPA SFDDMVLPYV SRMLMEEGID 60 DHFFYEYPDH PALLQVQLPF AQILSSYGSN TTSSSGDGSS GNGNNTTLTL SPSSSSPVSP 120 SNAWPHDAVQ LSRPLHSPPY THTVAPGHDG RSTDIQGSAF FNGAEEDAKT VTFPGGNADQ 180 GMLSSGSDFF KGLFPGENME MLNSAFFKGM EEASKFLPRD SSLPIYHGAS SRELSPTDGK 240 PVRSFTAQRE VVDGMLGGGA HGGGRRKNRD KLEAEEGRAS KMITQETEED GAREMFDEMM 300 LHDHEICMKG VQDLRIAVDK DTEKKSSRKK ARPRRGASDS EMVDLHTLLL HCAQAVSTDD 360 SRSASELLKQ IKRSSSPRGD AAQRLAHYFA EALEARLAGT GSQLYQSLMV KRTSVVDFLK 420 AYQLFMAACC CKKVAFTFSN KTIYDAVAGR SRLHIVDYGL NYGFQWPGLL RGLASREGGP 480 PEETGRRLGN CAQQLGVPFK FHGIAAKRET VRPEDLNIDR DEVLVVSSLC HFRHLMDENL 540 VFDSPSPRDQ ILENIRKMRP DVFIHGIVNG SYGSAYFLTR FREVLFHYAA QFDLLEATVP 600 RDSDERLLVE RDMFGRAALN VIACEGADRV ERPETYKQWQ VRNHRAGLTQ LPLKPDVVKV 660 VLDKVKDNYH KDFVVDGDGR WLLHRWKGRV LYALSTWVAD DATSNS*

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MATTPEEFLR EGILVRPEPP SPSVFLDLPP TPHGDAEDPA SFDDMVLPYV SRMLMEEGID  60
DHFFYEYPDH PALLQVQLPF AQILSSYGSN TTSSSGDGSS GNGNNTTLTL SPSSSSPVSP  120
SNAWPHDAVQ LSRPLHSPPY THTVAPGHDG RSTDIQGSAF FNGAEEDAKT VTFPGGNADQ  180
GMLSSGSDFF KGLFPGENME MLNSAFFKGM EEASKFLPRD SSLPIYHGAS SRELSPTDGK  240
PVRSFTAQRE VVDGMLGGGA HGGGRRKNRD KLEAEEGRAS KMITQETEED GAREMFDEMM  300
LHDHEICMKG VQDLRIAVDK DTEKKSSRKK ARPRRGASDS EMVDLHTLLL HCAQAVSTDD  360
SRSASELLKQ IKRSSSPRGD AAQRLAHYFA EALEARLAGT GSQLYQSLMV KRTSVVDFLK  420
AYQLFMAACC CKKVAFTFSN KTIYDAVAGR SRLHIVDYGL NYGFQWPGLL RGLASREGGP  480
PEETGRRLGN CAQQLGVPFK FHGIAAKRET VRPEDLNIDR DEVLVVSSLC HFRHLMDENL  540
VFDSPSPRDQ ILENIRKMRP DVFIHGIVNG SYGSAYFLTR FREVLFHYAA QFDLLEATVP  600
RDSDERLLVE RDMFGRAALN VIACEGADRV ERPETYKQWQ VRNHRAGLTQ LPLKPDVVKV  660
VLDKVKDNYH KDFVVDGDGR WLLHRWKGRV LYALSTWVAD DATSNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-37	349	697	8	374	GRAS family transcription factor containing p
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564369.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_003575618.1	0.0	PREDICTED: scarecrow-like protein 9 isoform X2
Refseq	XP_014758580.1	0.0	PREDICTED: scarecrow-like protein 9 isoform X2
TrEMBL	W5E9X1	0.0	W5E9X1_WHEAT; Uncharacterized protein
STRING	BRADI2G52227.1	0.0	(Brachypodium distachyon)
STRING	BRADI4G09180.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-124	SCARECROW-like 14