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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003146G0100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRAS | ||||||||
Protein Properties | Length: 707aa MW: 78388.1 Da PI: 6.1921 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 308.5 | 1.6e-94 | 346 | 697 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cA+avs++d + a++lL++++ +sp+gd+ qRla+yf+eAL+arla+++s+ly++l +++ts +++ l+a++lf ++ + k+++ PH01003146G0100 346 HTLLLHCAQAVSTDDSRSASELLKQIKRSSSPRGDAAQRLAHYFAEALEARLAGTGSQLYQSLMVKRTS---VVDFLKAYQLFMAACCCKKVAF 436 679***************************************************************999...********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 N++I++av+g +r+Hi+D+++++G+QWp Ll+ LasR++gpp eetg+rL + A++lgvpf+f+ +a + e++ PH01003146G0100 437 TFSNKTIYDAVAGRSRLHIVDYGLNYGFQWPGLLRGLASREGGPP------------------EETGRRLGNCAQQLGVPFKFHG-IAAKRETV 511 *******************************************98..................58********************.69999*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++e+L+++++E+l+V++ + +l+de++ +s +rd++L+ +++++P+v+++ + +++s+ Fl+rf e l +y+a fd lea++pr+s+e PH01003146G0100 512 RPEDLNIDRDEVLVVSSLCHFRHLMDENLVFDSpsPRDQILENIRKMRPDVFIHGIVNGSYGSAYFLTRFREVLFHYAAQFDLLEATVPRDSDE 605 ****************************98877779********************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r vEr ++gr++ nv+acega+r+er et+++W+ r ++aG++++pl+ +++k + ++ + + + v+ + +l+ Wk+r L+++S W PH01003146G0100 606 RLLVERDMFGRAALNVIACEGADRVERPETYKQWQVRNHRAGLTQLPLKPDVVKVVLDKVKDNYHKDFVVDGDGRWLLHRWKGRVLYALSTW 697 ***************************************************************9888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.285 | 319 | 678 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.4E-92 | 346 | 697 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MATTPEEFLR EGILVRPEPP SPSVFLDLPP TPHGDAEDPA SFDDMVLPYV SRMLMEEGID 60 DHFFYEYPDH PALLQVQLPF AQILSSYGSN TTSSSGDGSS GNGNNTTLTL SPSSSSPVSP 120 SNAWPHDAVQ LSRPLHSPPY THTVAPGHDG RSTDIQGSAF FNGAEEDAKT VTFPGGNADQ 180 GMLSSGSDFF KGLFPGENME MLNSAFFKGM EEASKFLPRD SSLPIYHGAS SRELSPTDGK 240 PVRSFTAQRE VVDGMLGGGA HGGGRRKNRD KLEAEEGRAS KMITQETEED GAREMFDEMM 300 LHDHEICMKG VQDLRIAVDK DTEKKSSRKK ARPRRGASDS EMVDLHTLLL HCAQAVSTDD 360 SRSASELLKQ IKRSSSPRGD AAQRLAHYFA EALEARLAGT GSQLYQSLMV KRTSVVDFLK 420 AYQLFMAACC CKKVAFTFSN KTIYDAVAGR SRLHIVDYGL NYGFQWPGLL RGLASREGGP 480 PEETGRRLGN CAQQLGVPFK FHGIAAKRET VRPEDLNIDR DEVLVVSSLC HFRHLMDENL 540 VFDSPSPRDQ ILENIRKMRP DVFIHGIVNG SYGSAYFLTR FREVLFHYAA QFDLLEATVP 600 RDSDERLLVE RDMFGRAALN VIACEGADRV ERPETYKQWQ VRNHRAGLTQ LPLKPDVVKV 660 VLDKVKDNYH KDFVVDGDGR WLLHRWKGRV LYALSTWVAD DATSNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-37 | 349 | 697 | 8 | 374 | GRAS family transcription factor containing p |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564369.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_003575618.1 | 0.0 | PREDICTED: scarecrow-like protein 9 isoform X2 | ||||
Refseq | XP_014758580.1 | 0.0 | PREDICTED: scarecrow-like protein 9 isoform X2 | ||||
TrEMBL | W5E9X1 | 0.0 | W5E9X1_WHEAT; Uncharacterized protein | ||||
STRING | BRADI2G52227.1 | 0.0 | (Brachypodium distachyon) | ||||
STRING | BRADI4G09180.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-124 | SCARECROW-like 14 |