PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002623G0240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 404aa    MW: 42797.3 Da    PI: 6.1013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002623G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.3e-053093471255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  PH01002623G0240 309 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 347
                      7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.309297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-10307353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-5307351No hitNo description
Gene3DG3DSA:4.10.280.104.9E-8307368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMASSSSSNL SDHLLQDDLP WPSLPFAPTL HHTIGANHQW SQPLMLNCSD HFTSDELEVL  60
LTAQGHHHSQ SAAPSPTPPQ LSSVLMMQEL EFQWSNCAVA DASMAMLISQ QNSHTIKAEE  120
ELPAESLDNP RPSCGTTIAY NDTVDGAGLP LAALDGAVLP SVNVSRLQKP CPAAAPLPGD  180
AFEILASASL CKALLSQAST VLHNGMPLLT EHHVPYGPPA RLQGPSIDNY KVSQSSRATG  240
VQDILVGLDP TLALIQSKMG VPPVSGNNAA EVRGGGHGSA EHKLSVPSSS KKHRLESRSS  300
TIVPSFKVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQDQV EGPSANGGEN  360
REEAAANKLD LRSRGLCLVP LSCTSYVTNE NGVWAPPPNF RGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002623G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967935.11e-131transcription factor bHLH123 isoform X2
TrEMBLA0A3L6STE61e-141A0A3L6STE6_PANMI; Uncharacterized protein
STRINGPavir.Eb01016.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-33bHLH family protein