PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002247G0090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 94aa    MW: 9446.37 Da    PI: 6.4688
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002247G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.93.3e-30963358
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     +vrY eC++NhAas+Gg+avDGC+Ef+++ geegt+ al+CaACgCHR+FHRr  +
  PH01002247G0090  9 GVRYGECRRNHAASMGGYAVDGCREFLAE-GEEGTSGALRCAACGCHRSFHRRVGA 63
                     79**************************8.999********************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-17860IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-291061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-231160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.7841261IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MAFGGCCGGV RYGECRRNHA ASMGGYAVDG CREFLAEGEE GTSGALRCAA CGCHRSFHRR  60
VGAQHCCCDD AATAAGGGWD CSPESTASST TAS*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002247G0090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1079041e-48AK107904.1 Oryza sativa Japonica Group cDNA clone:002-134-F11, full insert sequence.
GenBankAP0051591e-48AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149641e-48AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-48CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8314431e-48CT831443.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034C07, full insert sequence.
GenBankCT8314441e-48CT831444.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA001I02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321184.13e-33mini zinc finger protein 4
SwissprotQ0J5F84e-34MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBLA0A3L6RK526e-33A0A3L6RK52_PANMI; Mini zinc finger 3
TrEMBLB6U4048e-33B6U404_MAIZE; Mini zinc finger 3
STRINGONIVA08G17170.11e-32(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.13e-25mini zinc finger 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]