PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001129G0380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 232aa    MW: 26026.7 Da    PI: 9.2322
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001129G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA26.77.7e-09175194120
             GATA   1 CsnCgttkTplWRrgpdgnk 20 
                      Cs C+ttkTplWR+gp g+k
  PH01001129G0380 175 CSDCNTTKTPLWRSGPCGPK 194
                      ****************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0014169210IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.077173192IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.1E-7173194IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.1E-6175194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEGDQD QGHFPAFHLL AKDPPILFPF MINSPVEHQG QSYGDQHLRH  60
QVLGESNQQF NDHMMMGGSD AFPTPAQFRP TIQSIGSDMM QRSSYHPYDI ENKRADGSAS  120
KWTSTTPPAK MRIVRKATND TEGGAARKPR RRAQAYQADE SQKQQQLAMG VIRVCSDCNT  180
TKTPLWRSGP CGPKVKLLSR HPLSLIFMCS MCNFASYRVL QVVTLIPSTQ HI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001129G0380
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922380.0FP092238.1 Phyllostachys edulis cDNA clone: bphylf025c09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571121.11e-106putative GATA transcription factor 22
SwissprotQ6YW481e-100CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLI1HYT11e-105I1HYT1_BRADI; Uncharacterized protein
STRINGBRADI3G08240.21e-106(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-11cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]