PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001002G0190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 277aa    MW: 29425.3 Da    PI: 9.0327
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001002G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.71.6e-08141160120
             GATA   1 CsnCgttkTplWRrgpdgnk 20 
                      Cs C+ttkTplWR+gp g+k
  PH01001002G0190 141 CSDCNTTKTPLWRSGPCGPK 160
                      ****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.85E-5133159No hitNo description
SMARTSM004010.0035135176IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.077139158IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-6139158IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDPPILFPFV INNSSPSDSS LIYGSDHHLR QHQAILEPQH MIGGSSSVFA TPFPTVESIH  60
DDMIERSSYD PYDMEKLQVT SGSVKTGKWT APAAAKMRIT RKTSDSGVGG AAKKPRRRAQ  120
AYEDHNHSSM MNQPLGVIRV CSDCNTTKTP LWRSGPCGPK AAEGAAGDDG LRGGAKVGTP  180
SDAATAHPKV KKEKRADVDR SLPFKKRCKL VVQDHTATTA AAADDKAIAK SAEVVNWGKS  240
SAAAAACFRS SAFAVQDEIT DAAMLLMTLS CGLVRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001002G0190
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563721.11e-113GATA transcription factor 21
SwissprotQ6YW481e-62CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A3B6SJC11e-113A0A3B6SJC1_WHEAT; Uncharacterized protein
TrEMBLA0A446YMA11e-113A0A446YMA1_TRITD; Uncharacterized protein
STRINGBRADI1G37480.11e-113(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.17e-11GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]