PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000985G0610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 955aa    MW: 104627 Da    PI: 5.5152
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000985G0610genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP25.92.7e-08154176123
                      --SSTT-----TT--HHHHHTT- CS
              SBP   1 lCqvegCeadlseakeyhrrhkv 23 
                      +CqvegC adl++ak+yhrrhk+
  PH01000985G0610 154 ACQVEGCGADLTTAKDYHRRHKM 176
                      5********************97 PP

2SBP43.21e-131802094877
                      SEEETTT--SS--S-STTTT-------S-- CS
              SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      rfh l+efDe+krsCrrrLa+hn+rrrk+ 
  PH01000985G0610 180 RFHLLQEFDEGKRSCRRRLAGHNRRRRKAC 209
                      9**************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-9147176IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.452152208IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-21153212IPR004333Transcription factor, SBP-box
PfamPF031102.9E-7180207IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.5E-4180195IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.03E-8724840IPR020683Ankyrin repeat-containing domain
SMARTSM002481.7734763IPR002110Ankyrin repeat
PROSITE profilePS502979.543734801IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-8735845IPR020683Ankyrin repeat-containing domain
CDDcd002043.36E-9739839No hitNo description
SMARTSM00248250780812IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MEAARVGAQS RHLYGGGLGE LDPNRREKRV FGWDLNEWSW DSERFVATPV PAATANGLAL  60
NSSPSSSEEA RAEVARNFNV RGDSDKRKRV VVIDDDDGDD VEDEDLMSNG GGALSLRLGG  120
DGVAGGAVEG GGVNEEERNG KKIRVQGGSS SGPACQVEGC GADLTTAKDY HRRHKMFLYR  180
FHLLQEFDEG KRSCRRRLAG HNRRRRKACP EIAVGGTASI EDKVSSYLLL SLLGICANLN  240
SDNAEHLKGQ ELLSNLWRNL GTVAKSLDPK ELCKLLEACQ SMQNGSNAGT SEAANALLNT  300
AAAEAAGPSN SKVPFVNGGQ YGQASSVVPV QSKATMVATP EPPTCKFKDF DLNNTCNDME  360
GFEDGYEGSP ALAFKATDSP NGPSWIQQDS TQSPPQTSGN SDSTSAQSLS SSNGDAQCRT  420
NKIVFKLFEK VPSDLPPVLR SQILGWLSSS PTDIESYIRP GCIILTVYLR LVESAWRELS  480
DNMSSHLDKL LSSSTDNFWA SGLVFVMVRR QIVFMHNGQV MLDRPLAPNA RHYCKILCVR  540
PVAAPYSATV NFRVEGVNLV GASSRLICSF EGRCIFQEDT AILADDVEHE DTECLNFCCP  600
LSGSRGRGFI EVEDSGFSNG FFPFIIAEQD VCSEVCELES IFESSSHEQA DDDNARNQAL  660
EFLNELGWLL HRANRISEHD TVELPQAAFN LWRFRNLGTF AMEREWCAVT KMLLDLLFMG  720
LVDVGSQSPE QVVLSENLLH TAVRRKSVQM VRFLLRYKAN KSLKGTAETY LFRPDARGPS  780
TFTPLHIAAA TSDAEDVLDA LTDDPGLVGI NVWRNERDET GFTPEDYARQ RGNDAYLNLV  840
QKKIDKHLRK GHVVLGVPSS MCPVITDGVK PGDVSLEIRR SMPMAPQVPR CNICSRQALM  900
YPNSAARTFL YRPAMLTVMG VAAICVCVGI LLHTFPKVYA APTFRWELLE RGAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-15148207484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000985G0610
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631511.10.0squamosa promoter-binding-like protein 6 isoform X1
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A3Q8ANT30.0A0A3Q8ANT3_9POAL; Squamosa-promoter binding protein-like protein
STRINGOGLUM03G39810.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-178squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]