PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000920G0420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 692aa    MW: 76450.6 Da    PI: 6.1694
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000920G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP241e-07125148225
                      -SSTT-----TT--HHHHHTT--H CS
              SBP   2 CqvegCeadlseakeyhrrhkvCe 25 
                      Cq++gC+adl++a++yh+rhk   
  PH01000920G0420 125 CQADGCQADLTNARDYHKRHKNLA 148
                      ********************9655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.4E-7119145IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-6123145IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.66E-5430576IPR020683Ankyrin repeat-containing domain
CDDcd002044.06E-5466574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MEAGFLREDG QTGVARMSGG LKMKKKSLEW DLNDWRWDGN LFLATPSNAT APSGCSNREL  60
GRAEGEIDFG VIDKRRRVAP EDDREECSDA AITNGDHGRM VIQRGQSSEE ERRRKDACSS  120
SAPSCQADGC QADLTNARDY HKRHKNLAAI AGTQVYQDML KNANSAAITS NAGSYVANGF  180
TIHESTRPPI PVGTESSAED PPDKRRVQNF DLNEANVEED ESRTDKIVFK LFGKEPKDFP  240
VDLRAQILNW LSHCPSDMES YIRPGCVILT IYLRLPNWMW DKLDADPAPW IEKLISISID  300
SFWRTGWVYA RVQDCLTLSC NGRLMLVSPW QPVIGDKHQI LSVTPIAVAC SSTANFSVKG  360
FNIVQPTTKL LCIFGGKYLI QEATQMLLDD TTMQQGPQCL TFSCSFPSTS GRGFIEVEDC  420
DQSSLSFPFV VAEESEWCAV VKKLLDTLFQ GNIDLDVPSP VEFALGEDLI FTAVNKRSKP  480
LVDFLLRYTT NFAPVDSGAV APVRFLFTPD ITGPSNITPL HIAATISDAA GVLDALTDDP  540
QQLGIKAWKN ARDATGFTPE DYARKRDHIS YIQMVQSKID SRLPNAHVSV AMPSTDITAK  600
HASRLRSTDQ TTFDVQKSQQ SDKRPLSCRH CVQHLAYRPH SKRFLSNRPA VLSLLAIAAV  660
CVCVGLIMHS ALRVSGMTGP FFWNSLLSGP E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000920G0420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614292.10.0squamosa promoter-binding-like protein 1 isoform X3
RefseqXP_015614297.10.0squamosa promoter-binding-like protein 1 isoform X3
RefseqXP_025880633.10.0squamosa promoter-binding-like protein 1 isoform X3
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A0E0FKF30.0A0A0E0FKF3_ORYNI; Uncharacterized protein
STRINGBRADI2G11240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-104squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]