PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000887G0620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 286aa    MW: 30748.7 Da    PI: 10.8005
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000887G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57347.64.5e-1588176397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +q+lw++ De++lL G   f+a++g+ p   d+ a++e +++s+s +  +  +  K++rLK Kf +           + s +h++ + +ls  +
  PH01000887G0620  88 IQKLWTDADEVALLTGAAAFRARHGAAPRLpDMGALFESLRGSLSPHLDQAKVYYKLKRLKSKFLHSAPA-------ATSGPHERRVRDLSADL 174
                      69************************98877**********************************99888.......67788888888888888 PP

           DUF573  96 Wg 97 
                      Wg
  PH01000887G0620 175 WG 176
                      87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-1589176IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDAAARLHPS PPRSKKRSSR AKPRAGDRRR SPNPNPSSRR DRDHGASAPS RKSERKRKPR  60
SFADSASLAI AIAAPASSGG GGGGGHGIQK LWTDADEVAL LTGAAAFRAR HGAAPRLPDM  120
GALFESLRGS LSPHLDQAKV YYKLKRLKSK FLHSAPAATS GPHERRVRDL SADLWGAELA  180
PPVEDDVEAE EGDADEGYIA GDVEVAVRLP VVSEVLGEHW RRNARALSGV SLEKGLALLR  240
AGEGRVVETK WRRQLDAEMR TQVRRHDLAK EVYGLLTDAV KGLGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000887G0620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649213.11e-111STOREKEEPER protein
RefseqXP_008649214.11e-111STOREKEEPER protein
RefseqXP_020395036.11e-111STOREKEEPER protein
TrEMBLF2EDB71e-111F2EDB7_HORVV; Predicted protein
STRINGGRMZM2G008558_P021e-110(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-06DNA-binding storekeeper protein-related transcriptional regulator