PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000708G0250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 530aa    MW: 56990.8 Da    PI: 6.7008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000708G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS223.98.1e-692154102200
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkf 93 
                      v +L++cA+ +++ ++ +a+ +Larl e+as +g +pm+R+aayf+eALa r++r++++++++ pp+e +++   ++ ++al++++ ++Pi++f
  PH01000708G0250 215 VGALTACADSLAACNHDAANYYLARLGETASAAGpTPMHRVAAYFAEALALRVVRMWPHVFDISPPRELTDDAiNDDDAMALRILNSITPIPRF 308
                      678******************************************************************988889999**************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+t N+ +l+a+eg+ervHiiDfdi+qGlQWp+Llq+La+Rpe+p+++RiTgvg+    s++ l+etg rLa++A++lg+ fef++ v++rle
  PH01000708G0250 309 LHFTLNERLLRAFEGHERVHIIDFDIKQGLQWPSLLQSLAARPEPPAHVRITGVGE----SRQGLQETGARLARVATALGLAFEFHA-VVDRLE 397
                      ********************************************************....9**************************.7***** PP

             GRAS 188 dleleeLrvkpgE 200
                      d++l++L+vk+g+
  PH01000708G0250 398 DVRLWMLHVKRGD 410
                      **********975 PP

2GRAS81.61.3e-25410506279374
             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsv 370
                      + +r+k E++ ++rei+n+va ega+r+erhe+++ Wr+r+e+ GFk++ +++++a+q +++ r+++ d y+v+ +   + l+l W d++L++v
  PH01000708G0250 410 DPARAKAEEM-FAREIRNAVAFEGADRIERHESFAGWRRRMEDGGFKNAGIGDREAMQGRMIARMFAPDKYSVQAQgdGEGLTLRWLDQALYTV 502
                      5689999*99.********************************************************888***9654367788*********** PP

             GRAS 371 SaWr 374
                      +aW+
  PH01000708G0250 503 TAWT 506
                      ***6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.039188529IPR005202Transcription factor GRAS
PfamPF035142.8E-66215410IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLAGCSFSSR HQMSTAQRFD ILPCGFSKRS NRGDAAAPRV AGDARSSTTC SFRTHPAPPV  60
TQAVSWGAKP EPGGNGGGVW ERNRAVKRAH EEEAAEYGPI VRAKRTRMGS DGDEVWFHQS  120
IAGTMQATAA GEGDEAEEEK VFLVPSAAAF PHGMAAGPSL AAAKEEEYSK SPSHSSSSSG  180
TDGGSSAMPP PPPRVHARNG VPSPGVAERE ALELVGALTA CADSLAACNH DAANYYLARL  240
GETASAAGPT PMHRVAAYFA EALALRVVRM WPHVFDISPP RELTDDAIND DDAMALRILN  300
SITPIPRFLH FTLNERLLRA FEGHERVHII DFDIKQGLQW PSLLQSLAAR PEPPAHVRIT  360
GVGESRQGLQ ETGARLARVA TALGLAFEFH AVVDRLEDVR LWMLHVKRGD PARAKAEEMF  420
AREIRNAVAF EGADRIERHE SFAGWRRRME DGGFKNAGIG DREAMQGRMI ARMFAPDKYS  480
VQAQGDGEGL TLRWLDQALY TVTAWTPASE GAGGSTVSAS TTASHSQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-182143894180GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAK1064490.0AK106449.1 Oryza sativa Japonica Group cDNA clone:002-103-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964401.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN35e-84SCL28_ARATH; Scarecrow-like protein 28
TrEMBLJ3MAW70.0J3MAW7_ORYBR; Uncharacterized protein
STRINGOB06G11610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-83GRAS family protein