PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000595G0290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 354aa    MW: 38378 Da    PI: 9.035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000595G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.5e-16159205455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  PH01000595G0290 159 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 205
                      5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.98E-18152209No hitNo description
SuperFamilySSF474597.2E-21153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.866155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-14159205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-20159213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNFTFFSKPL QRLPGCERAS AAATASNPVE STMVQTTTNR LRNTPLFSEQ RMAWLQPPKG  60
SRTTVAAAPP APLVPCRQGE TAATVTQRLP SEARAPEPVA AAATSLSVCS GNSDRSQLKR  120
SNYQAVEWSL SQDEDLDDEP DTLRRSAARS TKRSRVAEVH NLSERRRRDR INEKMRALQE  180
LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM MSMGTGLYVP PMLLPAAAMQ HLQMPPMAHF  240
PHLGTMGLGF GMGTFDMVPF PRVASTQFPC PMIPGAPMAM PPGSATVPMF GLPGQAMPSL  300
ASFPPAPGHM ANALQAEQML SEAATRGGAD TSDHSQFPIV PQGDQKQQRP KNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000595G0290
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662938.11e-109transcription factor APG isoform X2
SwissprotQ0JNI91e-94PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0A9J5P61e-119A0A0A9J5P6_ARUDO; Uncharacterized protein
STRINGGRMZM2G062541_P011e-108(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-35phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]