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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000548G0610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | SBP | ||||||||
Protein Properties | Length: 304aa MW: 32688.5 Da PI: 7.088 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.9 | 6.6e-24 | 237 | 283 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 CqvegC+ dls++k+yhr+h+vCe+hskap+v+v+gle+rfCqqCsr PH01000548G0610 237 CQVEGCKIDLSSVKDYHRKHRVCEAHSKAPKVVVAGLERRFCQQCSR 283 **********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-24 | 229 | 285 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.563 | 234 | 303 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.81E-23 | 236 | 284 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.9E-19 | 237 | 286 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDGEVATVVG EMREWEVVEQ AQRRKWVLVG MVRQPGSSFE IQVGAEAEIF ISGMGSFGMD 60 WNQKSSELWD WENLLPISTN ADENPKNVMH AEPKFAGVAA AMGHESVHSS GGTFSSSSEM 120 GYGSPKSSIY ASIDSSSKVG KNTEFKFATV KEPDKNIGKK TELSKVDDTG NSPTSVVAVS 180 SGEPVIGLKL GKRTYFEDVC GGQNVKSSPS GASAVTPSTA FAKKAKVAQQ NTQNSYCQVE 240 GCKIDLSSVK DYHRKHRVCE AHSKAPKVVV AGLERRFCQQ CSRGQRASIY LQSTGGEDEN 300 NPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 2e-17 | 237 | 283 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000548G0610 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646870.1 | 1e-104 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | A2X0Q6 | 1e-97 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-97 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A3S6H5Y3 | 1e-165 | A0A3S6H5Y3_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | LPERR02G02980.1 | 1e-104 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-36 | squamosa promoter binding protein-like 2 |