PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000519G0700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 324aa    MW: 33700.1 Da    PI: 10.224
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000519G0700genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.12.2e-4055154289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  PH01000519G0700  55 APKRNSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPahlraa 148
                      799******************************************************************9997777777777755555444333 PP

              TCP  89 .....k 89 
                           +
  PH01000519G0700 149 lpspaA 154
                      333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3960195IPR005333Transcription factor, TCP
PROSITE profilePS5136927.86161115IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEVAGDAGGG RRPNFPLQLL EKKEGQPCSS TAVGGTSGAG GNGNGSGEVQ VRKTAPKRNS  60
TKDRHTKVEG RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AVIAATGTGT  120
IPANFTSLNI SLRSSGSSLS APAHLRAALP SPAAAARFGA RADAWDRVVG FGFPSDGPAS  180
SSSSPSPLLL NFHSGSVGLD VQAQPSPSAA GPLQEEAMGA RNAATATAVP AADGRLEAGG  240
LWATDKRVRL LTNGVARGNT REWAMLMCWA YVSAIGGMIS CPECGQHSPA AESRRKRGGG  300
MRPIPCWSCR LFSVPYWSCH MLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000519G0700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057330.0AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBankAP0058480.0AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankGQ2294830.0GQ229483.1 Oryza sativa Japonica Group TCP transcription factor (TCP6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825808.12e-98transcription factor TCP14-like
TrEMBLA0A0D9YY763e-97A0A0D9YY76_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CRH23e-97A0A0E0CRH2_9ORYZ; Uncharacterized protein
TrEMBLI1P4923e-97I1P492_ORYGL; Uncharacterized protein
STRINGPavir.Ab03005.1.p3e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-46TCP family protein