PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000423G0070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 276aa    MW: 29597 Da    PI: 7.8511
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000423G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.52.6e-3054143389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...k 89 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++++++  + + ss  +  +s+ +   +
  PH01000423G0070  54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAQHEIDKLPPLQFPPQDLVAHMSSPMAPPFSNGAdhaA 143
                      78*************************************************************999993333333333333333333221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.28455113IPR017887Transcription factor TCP subgroup
PfamPF036343.1E-2755117IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MISGNHANEE LQASCVRKVD QSAGDGGAFK AMASSRHWSA STESRIVRVS RVFGGKDRHS  60
KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLNAAQHEI DKLPPLQFPP  120
QDLVAHMSSP MAPPFSNGAD HAAAATTAAA SMLVDGDKAY CNSNLKGFMS LNNSLGLVNS  180
SMPSLAHGSY YTAESWNNGN VHEVSHGASP QVVAHHSPFP SLLSLAPGSQ LVFYSSEGGF  240
AMKEAADQFP VDNLDHSQGQ LSLSSARSFF HSGSQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2060114155Putative transcription factor PCF6
5zkt_B2e-2060114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000423G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0976140.0FP097614.1 Phyllostachys edulis cDNA clone: bphyem213i07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.11e-125transcription factor TCP13 isoform X1
RefseqXP_004961522.11e-125transcription factor TCP13 isoform X1
RefseqXP_012700333.11e-125transcription factor TCP13 isoform X1
TrEMBLK3Z8G31e-124K3Z8G3_SETIT; Uncharacterized protein
STRINGSi022830m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5