PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000379G0890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 387aa    MW: 42430.3 Da    PI: 9.087
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000379G0890genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.9e-1355111155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n   k+k  + g ++ +e Aa+a++ a++k++g
  PH01000379G0890  55 SVYRGVTRHRWTGRFEAHLWDkNNWNEsqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 111
                      78*******************65558884446666.99***9**************98 PP

2AP252.11.6e-16154205155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  PH01000379G0890 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 205
                      89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-955111IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1555121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1356121IPR001471AP2/ERF domain
PROSITE profilePS5103219.13756119IPR001471AP2/ERF domain
SMARTSM003803.7E-2056125IPR001471AP2/ERF domain
PRINTSPR003677.8E-65768IPR001471AP2/ERF domain
CDDcd000188.31E-23154215No hitNo description
SuperFamilySSF541717.19E-18154215IPR016177DNA-binding domain
PfamPF008471.6E-12154205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-18155214IPR001471AP2/ERF domain
PROSITE profilePS5103218.255155213IPR001471AP2/ERF domain
SMARTSM003806.4E-25155219IPR001471AP2/ERF domain
PRINTSPR003677.8E-6195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRPRKNTTT TNGIGNTGHG NAADASAATT AVAVRAKPKR TRKSVPRESP SQRSSVYRGV  60
TRHRWTGRFE AHLWDKNNWN ESQKKKGKQG AYDDEEAAAR AYDLAALKYW GPDTILNFPL  120
SAYEEELKGM EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYATQE EAAMAYDMAA IEYRGLNAVT NFNLSRYIKW LRPDGMSAAQ NPRPMLANLA  240
AQELPAIDLD GMASSFLHDR QSMEDSMAAA QFPLSTRTSL GHTPTTSALS LLLQSPKFKE  300
MIERTSAAES STTSSSSLSP PRPPPQATKD DGASPQCSFP EDIQTFFGCE DGAGVGVGLG  360
YTDVDGLFFG DLTAYASPVF HFELDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116170.0AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9XDW00.0A0A0D9XDW0_9ORYZ; Uncharacterized protein
STRINGOB09G17420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-100ARIA-interacting double AP2 domain protein