PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000203G1150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-X1
Protein Properties Length: 758aa    MW: 81594.6 Da    PI: 7.6099
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000203G1150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.96.6e-062643118
         zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
                     CG+H C   CH+GpC++C
  PH01000203G1150 26 CGNHACLDVCHPGPCGEC 43
                     ****************** PP

2zf-NF-X122.32.9e-0784101118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H+C+ +CHeG+CppC
  PH01000203G1150  84 CGVHRCKVTCHEGECPPC 101
                      ****************** PP

3zf-NF-X116.81.4e-05289305117
         zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                      CG H C ++CH+ pC+p
  PH01000203G1150 289 CGLHACTRTCHPSPCDP 305
                      ***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.92E-91659No hitNo description
PfamPF014222.6E-42643IPR000967Zinc finger, NF-X1-type
SMARTSM004380.00392645IPR000967Zinc finger, NF-X1-type
CDDcd060081.17E-1274122No hitNo description
PfamPF014223.9E-684101IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-484103IPR000967Zinc finger, NF-X1-type
CDDcd060087.25E-8169221No hitNo description
PfamPF014220.0037179197IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013179198IPR000967Zinc finger, NF-X1-type
PfamPF0142290236252IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49236254IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033289305IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029289324IPR000967Zinc finger, NF-X1-type
PfamPF014225.6326352IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16333354IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MAVKGKLSEE DGVFSCSEAC GHMLACGNHA CLDVCHPGPC GECELMPEKV TTCHCGKTRL  60
QEKRASCLDP IPTCDMVCDK KLLCGVHRCK VTCHEGECPP CLVRVEQRCR CGSSGQMVEC  120
YKVLKEDFRC NKPCGQKKNC GRHRCSECCC PLSKPFAQLE GGNWDPHFCQ IPCGKKLRCG  180
QHGCQQLCHS GHCLPCRETI FNDLTCACGR TSIPPPLSCG TPTPSCPHQC LVPQPCGHPA  240
SHQCHFGDCP PCVVPVMREC IGGHVVLRNI PCGSKDIRCN QPCGKNRQCG LHACTRTCHP  300
SPCDPPPANG DASSSSGGKA SCGQVCGVPR RECKHTCTAP CHPSSPCPDL RCEFPVTITC  360
SCGRITATVP CGAGGTSSGD NMFEVSIIQK LPMPFQPVES NGRRVPLGQR KLSCDEECAK  420
MERKKVLAEA FDITTPNLDA LHFGENSNAS DLLSDLFRRE PKWVLAIEER CKFLVLGKTR  480
GNSSSNLKVH VFCHMMKDKR DAIRVIADRW KLSVQAAGWE PKRFVTIHVT PKSKPPARIL  540
GSKPGVPVTA SHPYFDPLVD MDPRLVVAML DLPRDADVSA LVLRFGGECE LVWLNDKNAV  600
AVFNDPARAA TALRRLDYGS AYQGAAMFLP SSSAQASSSG NVWVAAQNGG LAAKSSANPW  660
KKATASEPDL SSGDWTGVIG HAPGSVWSRG DTAAQVMGTQ NRWNVLESDA AMSSGPVDER  720
KPAPCTDAGS STEPNVGPLV SKMQPDIEVD DWEEACE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0D3GEY00.0A0A0D3GEY0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA021526-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1