PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000164G0630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 463aa    MW: 50158.1 Da    PI: 9.9127
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000164G0630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.85.6e-42180256278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC++dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l efD++krsCrrrL++hn+rrrk+q+
  PH01000164G0630 180 CQVEGCKVDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLSDHNARRRKPQP 256
                      **************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-34172241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.744177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.19E-39179259IPR004333Transcription factor, SBP-box
PfamPF031104.6E-32180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGSFAMNWNQ KNSMLWDWEN LAPLGPNSME NPKNVSHPEP RVVGVGAARH GSTNSSGGTF  60
TSSSEMGHGS SKSSMSASID SPSKVGNGSE FKFAAVKGHA KNAGKGGEAG RVEDSGTSSP  120
MMAVSHGEPL IGLKLGKRTY FENVCGGQNV KSSAPSGMTS PSTVVKKTKM SQQNTQSSYC  180
QVEGCKVDLS SAKDYHRKHK VCEAHSKAPK VVVAGLERRF CQQCSRFHGL AEFDQKKRSC  240
RRRLSDHNAR RRKPQPETIS CSSSRLSTMF YGNARQQTNL FFSQSPFGQV RSNAISSWDS  300
LGGFKFTETK LPWMKPTKME GLDELHFSNP QMPNNVVAHA VHHHDFDGLM PFKGTNTKVL  360
NQGVEASAVV SNSNGTPDLR RALSLLSNDS WGSTDIQPSS QVHSSSVMPP LATVTASNPV  420
MHALEPSPGG FWQDDPPPLD QTPQVQAFMH LSNRGSSGYG QMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-281802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000164G0630
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0967320.0FP096732.1 Phyllostachys edulis cDNA clone: bphylf045e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656454.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694397.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694398.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694399.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694400.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694401.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694402.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694403.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694404.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694405.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotA2YGR50.0SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A3Q8AKY80.0A0A3Q8AKY8_9POAL; Squamosa-promoter binding protein-like protein
STRINGOB06G34330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-55squamosa promoter binding protein-like 2