PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000131G1060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 212aa    MW: 21787.1 Da    PI: 4.6203
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000131G1060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP22.34.1e-076585525
              TCP  5 kdrhskihTkvggRdRRvRls 25
                       r+ ++hTkv+gR+RR+R+ 
  PH01000131G1060 65 PPRNRDRHTKVEGRGRRIRMA 85
                     5799****************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MESQLQDRGE EDADADVRYH AAAEDAGNAA LAMATVGPTG AHGSVVPKPE PVPVEFLGGL  60
AVAPPPRNRD RHTKVEGRGR RIRMATAGLA PVSATSAPTG GGIPFIAIPA VGTGAASDGK  120
QMMPPAAVWM VPHAPSAAGA ANQPTHYWAF QTNPELVNFA GAQPINVANI QHQALYNAEH  180
LGSQKVSAVD QPQGEEDEYD GEALTDSSSE A*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000131G1060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576745.11e-43transcription factor PCF2
SwissprotA2YXQ12e-17PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH62e-17PCF2_ORYSJ; Transcription factor PCF2
TrEMBLI1IRY83e-42I1IRY8_BRADI; Uncharacterized protein
STRINGBRADI4G35520.15e-43(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]