PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000089G0980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 311aa    MW: 32398 Da    PI: 8.657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000089G0980genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.1e-11245290655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k    +++L +Ave+Ik Lq
  PH01000089G0980 245 SIAERERRTRISEKLRKLQELVPNM----DKQTGTSDMLDLAVEHIKGLQ 290
                      689*********************7....5778889*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.853239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-15242303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-11243294No hitNo description
Gene3DG3DSA:4.10.280.108.9E-14244302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8245290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-12245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRRFLPAGGG GEPSSSSSPG PHGERAGSKA AAGLRYGGGD ISLGRGHDLH SQFHSVGGVG  60
EAEMKDGVDT LARHSSSPAR FFSNLMVGNG FPGSKAGAAG GGGAEVHHHH PSMASNANSR  120
KMKSQLSFTA GPQAGASPHL SQISEDGAGL FPGADRAAGH SGENAVPRSS FSAAAGGGGG  180
GGFSIVGPWD ESRDLVATLG GYEFIGMSSS SALEMAGMDR YMQLQQDQVP FKVRAKRGCA  240
THPRSIAERE RRTRISEKLR KLQELVPNMD KQTGTSDMLD LAVEHIKGLQ SQLQTLKHEQ  300
EKCTCCSKGF D
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000089G0980
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0999120.0FP099912.1 Phyllostachys edulis cDNA clone: bphyem110m02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.11e-116transcription factor bHLH128 isoform X1
SwissprotQ8H1021e-52BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0E0K2371e-122A0A0E0K237_ORYPU; Uncharacterized protein
STRINGOPUNC02G21170.11e-123(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]