PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000057G0060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 348aa    MW: 38394.4 Da    PI: 8.3178
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000057G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40123201178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cq+egC+adls+ak+yhrrhkvC++hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  PH01000057G0060 123 RCQAEGCKADLSSAKRYHRRHKVCDHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 201
                      6******************************98725689*************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-33118186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.12121199IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-37122202IPR004333Transcription factor, SBP-box
PfamPF031101.7E-30124198IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDQESSIQRE QLGYNLEANS LALLPPSNAA HHTAIAHTPH DILQFYPTSH YLAGNPYSHF  60
TGSTFQSYYQ QAPAAPEYYF PTVVSSAEEN LASFAATQLG LNLGYRTYFP PRGGYTYGHH  120
PPRCQAEGCK ADLSSAKRYH RRHKVCDHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD  180
AKKSCRKRLA DHNRRRRKSK PSDADAADKR RAQANKAATT KDKAGSSSKN TSIGDGLETQ  240
VLGSAHLSKD QDHTMSLGEV VKEVVDPKGK ASMQQQAHHG LHQQSHLGFP FPSSSGSCFP  300
QSQAVSSIDN TSNIAQVQEP SLAFHQHHQH SNILQLGQAM FDLDFDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261241981184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193210RRRRKSKPSDADAADKRR
2194199RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000057G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7769910.0AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, cultivar: Nipponbare.
GenBankAK0681040.0AK068104.1 Oryza sativa Japonica Group cDNA clone:J013129G14, full insert sequence.
GenBankJX4627830.0JX462783.1 Oryza sativa Indica Group cultivar Teqing PAC1 mRNA, complete cds.
GenBankJX4627840.0JX462784.1 Oryza rufipogon strain C4 PAC1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0protein LIGULELESS 1
SwissprotQ01KM70.0SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A3Q8AHQ50.0A0A3Q8AHQ5_9POAL; Squamosa-promoter binding protein-like protein
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-41squamosa promoter binding protein-like 8