PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000050G0170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 360aa    MW: 38146.4 Da    PI: 8.8025
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000050G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.82.7e-4247122176
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      +CqvegC +dls ak y+ rhkvC +hskap v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  PH01000050G0170  47 RCQVEGCGVDLSGAKAYYCRHKVCGMHSKAPRVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 122
                      6*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.3E-3542109IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.41945122IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.12E-4046126IPR004333Transcription factor, SBP-box
PfamPF031103.5E-3348121IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEAGGGGDDV HGLKFGKKIY FEQDAAGGSG SATAAAGGKK APAPPPRCQV EGCGVDLSGA  60
KAYYCRHKVC GMHSKAPRVV VAGLEQRFCQ QCSRFHQLPE FDQGKRSCRR RLAGHNERRR  120
KPPLGTLSSR YGRLAASFHE EPGRFRSFLL DFSYPRVPSS VRDPWSTIQS GDRMSGTIQR  180
QGSHELHPHR STVAGYGDHA YNGQGGSAAG APLLPAFELP AGGCLAGVAT DSSCALSLLS  240
TQPWDSTHSA SHNRSPAMST TSTFEGNPVV PSVMASNYMA ASSAWTSSRG HEGARNVPLH  300
HLPHEVALNE VHPGSVHHGH FSGELELALQ GSARPNPPQV EHGSGSAFSH SSNAMNWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30481211184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000050G0170
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0953130.0FP095313.1 Phyllostachys edulis cDNA clone: bphylf047j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610961.11e-176squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0571e-177SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A3S6H5L50.0A0A3S6H5L5_9POAL; Squamosa-promoter binding protein-like protein
STRINGOMERI09G11350.11e-179(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.18e-48squamosa promoter binding protein-like 9