PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000045G0080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 605aa    MW: 64857.9 Da    PI: 6.5137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000045G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.41.9e-1192115811374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 
                      lve+L++cA+ +++ ++ +a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++++++ pp+e +++   ++ ++al++++ ++Pi++
  PH01000045G0080 211 LVEALTACADSLAACNHDAANYYLARLGEMASPAGpTPMHRVAAYFAEALALRVVRMWPHVFDISPPRELTDDAiNDDDAMALRVLNSITPIPR 304
                      6899******************************************************************988889999*************** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f h+t N+ +l+a+eg+ervH+iDfdi+qGlQWp+Llq+La+Rpe+p+++RiTgvg+    s++el+etg rLa++A+ lg+ fef++ v++rl
  PH01000045G0080 305 FLHFTLNERLLRAFEGHERVHVIDFDIKQGLQWPSLLQSLAARPEPPAHVRITGVGD----SRQELQETGARLARVAAVLGLAFEFHA-VVDRL 393
                      *********************************************************....9**************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres 279
                      ed++l++L+vk+gE++aVn+vl +hrll++++  +    ++L l +s+ + ++ + e+e  +ns+++ +rf++al+yy+  fd++ +a+l+ +s
  PH01000045G0080 394 EDVRLWMLHVKRGECVAVNCVLTMHRLLRDETGGA--LADFLGLTRSTGAAILLLGEHEGGLNSGRWEARFARALRYYAGAFDAVnAAGLADAS 485
                      ****************************6655444..589*********************************************999****** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvS 371
                       +r+k E++ ++r i+n+va ega+r+erhe+++ W++r+e+ GFk++ +++++a+q +++ r+++   y+v+ +   + l+l W d++L++v+
  PH01000045G0080 486 PARAKAEEM-FARGIRNAVAFEGADRFERHESFAGWQRRMEDGGFKNAGIGDREAMQGRMIARMFAPGKYSVQAQgdGEGLTLRWLDQALYTVT 578
                      *********.********************************************************4449999554367788************ PP

             GRAS 372 aWr 374
                      aW+
  PH01000045G0080 579 AWT 581
                      **6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.992185559IPR005202Transcription factor GRAS
PfamPF035146.7E-117211581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MLAGCSFSSR HQMSTAQRFD ILPCGFSKRS NRGDGAAPRG AGDARSTTTC SFRTHPAPPV  60
TQAVSWGAKP EPGGVWEKSR AVKRAHEEDA VEEYGPIVRA KRTRMGGDGD EVWFHQSIAG  120
TMQATAAGEG DEADEEKVFL VPSAAAFPHG MAAGPSLAAA KKEEYSKSPS HSSSSSGTDG  180
GSSAMPPPPP EVHARNGVPA PGVAEREALE LVEALTACAD SLAACNHDAA NYYLARLGEM  240
ASPAGPTPMH RVAAYFAEAL ALRVVRMWPH VFDISPPREL TDDAINDDDA MALRVLNSIT  300
PIPRFLHFTL NERLLRAFEG HERVHVIDFD IKQGLQWPSL LQSLAARPEP PAHVRITGVG  360
DSRQELQETG ARLARVAAVL GLAFEFHAVV DRLEDVRLWM LHVKRGECVA VNCVLTMHRL  420
LRDETGGALA DFLGLTRSTG AAILLLGEHE GGLNSGRWEA RFARALRYYA GAFDAVNAAG  480
LADASPARAK AEEMFARGIR NAVAFEGADR FERHESFAGW QRRMEDGGFK NAGIGDREAM  540
QGRMIARMFA PGKYSVQAQG DGEGLTLRWL DQALYTVTAW TPASEGAGGS TVSASTTASH  600
SQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-432115804374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308989.10.0ATP synthase D chain, mitochondrial
TrEMBLA0A0E0L7870.0A0A0E0L787_ORYPU; Uncharacterized protein
STRINGSi008220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-131GRAS family protein