PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000028G2500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 196aa    MW: 20554.6 Da    PI: 10.788
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000028G2500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.34.2e-2851129583
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssas 83 
                       +  ++ h kv+gR+RRvR+++ caar+F+L++eLG+++d++tieW l  a+p+i ++tg+++ +a  +c+++ s  +as
  PH01000028G2500  51 AQGGKDKHIKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEW-LPPAEPSILAATGSGTAPAvFSCSSAPSTTTAS 129
                      55679*****************************************.789***********8888844442222211111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-2353132IPR005333Transcription factor, TCP
PROSITE profilePS5136918.03554107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MASRGAATFQ FCRPMAMPTP TPLPQSMTMP FTAAPADVVV PAPKKASAGA AQGGKDKHIK  60
VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLPPA EPSILAATGS GTAPAVFSCS  120
SAPSTTTASP LLGKRPRQDQ ETPSFWEALQ PAQPVAWGLS PSQEAQAYAS VAQGHHLNLL  180
FALSGAARRP EKESR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000028G2500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647081e-106AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBankAL6630191e-106AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149601e-106AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635777.14e-83transcription factor TCP21
TrEMBLA0A3B6C9W33e-90A0A3B6C9W3_WHEAT; Uncharacterized protein
TrEMBLA0A446MIR83e-90A0A446MIR8_TRITD; Uncharacterized protein
STRINGTraes_2BL_4B6057E06.15e-91(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-30TCP family protein