PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000018G1460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 407aa    MW: 43367.9 Da    PI: 7.5439
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000018G1460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.71e-34982321110
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasnsssg..... 88 
                      aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG d++sk+++WL+++ak+ai+el++  + ++a ++e+e+s+ +++  s +     
  PH01000018G1460  98 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGCDRPSKAVDWLIRNAKAAIDELPDRpEVPPAADAEPEASEPAEQVTSTSygfgn 191
                      689**************************************************************73444433433333333332222234555 PP

              TCP  89 ...................kaaksaakskksqksaasalnl 110
                                         ++a+++ ks ++++s+as    
  PH01000018G1460 192 pggamtgvagsflphslgrNRASDNVKSLFPSSSTASGATA 232
                      66677777555555555542222222443333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-30100213IPR005333Transcription factor, TCP
PROSITE profilePS5136932.297101159IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEKICSHKLN TPRVLLKVYV RNTSSIIIIA PLGEEKERAQ AQEQLQIYHQ QGFSYLHHHQ  60
RRQQARGGAG ADGGSSGEST PAEALATAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR  120
LAAHTAIRFY DVQDRLGCDR PSKAVDWLIR NAKAAIDELP DRPEVPPAAD AEPEASEPAE  180
QVTSTSYGFG NPGGAMTGVA GSFLPHSLGR NRASDNVKSL FPSSSTASGA TAAHDDYRGS  240
PPDLLSRTTS SQPQELCLTL QSNQHQIFSH VSSNHHGMIS SAGVPGWPDH SQRMPSWHAS  300
EDSAGEGRGG GNGDSYMFSM PPRQGLDQSQ LFSHGEPLQS SGGWASARTW LDPLAAIHQP  360
SPMAGQVGFG HLVGGGGGGG FMGFLSPAGQ RLQGEEEQGS EVMRRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-19106160155Putative transcription factor PCF6
5zkt_B3e-19106160155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000018G1460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718070.0AB071807.1 Oryza sativa Japonica Group mRNA for transcription factor PCF7, partial cds.
GenBankAP0032680.0AP003268.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0503C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815346.10.0transcription factor PCF7-like
SwissprotQ8LT051e-158PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A2T8IK720.0A0A2T8IK72_9POAL; Uncharacterized protein
STRINGPavir.Eb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-39TCP family protein