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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000018G1460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | TCP | ||||||||
Protein Properties | Length: 407aa MW: 43367.9 Da PI: 7.5439 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.7 | 1e-34 | 98 | 232 | 1 | 110 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasnsssg..... 88 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG d++sk+++WL+++ak+ai+el++ + ++a ++e+e+s+ +++ s + PH01000018G1460 98 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGCDRPSKAVDWLIRNAKAAIDELPDRpEVPPAADAEPEASEPAEQVTSTSygfgn 191 689**************************************************************73444433433333333332222234555 PP TCP 89 ...................kaaksaakskksqksaasalnl 110 ++a+++ ks ++++s+as PH01000018G1460 192 pggamtgvagsflphslgrNRASDNVKSLFPSSSTASGATA 232 66677777555555555542222222443333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-30 | 100 | 213 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.297 | 101 | 159 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MEKICSHKLN TPRVLLKVYV RNTSSIIIIA PLGEEKERAQ AQEQLQIYHQ QGFSYLHHHQ 60 RRQQARGGAG ADGGSSGEST PAEALATAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR 120 LAAHTAIRFY DVQDRLGCDR PSKAVDWLIR NAKAAIDELP DRPEVPPAAD AEPEASEPAE 180 QVTSTSYGFG NPGGAMTGVA GSFLPHSLGR NRASDNVKSL FPSSSTASGA TAAHDDYRGS 240 PPDLLSRTTS SQPQELCLTL QSNQHQIFSH VSSNHHGMIS SAGVPGWPDH SQRMPSWHAS 300 EDSAGEGRGG GNGDSYMFSM PPRQGLDQSQ LFSHGEPLQS SGGWASARTW LDPLAAIHQP 360 SPMAGQVGFG HLVGGGGGGG FMGFLSPAGQ RLQGEEEQGS EVMRRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 106 | 160 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 106 | 160 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000018G1460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071807 | 0.0 | AB071807.1 Oryza sativa Japonica Group mRNA for transcription factor PCF7, partial cds. | |||
GenBank | AP003268 | 0.0 | AP003268.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0503C12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815346.1 | 0.0 | transcription factor PCF7-like | ||||
Swissprot | Q8LT05 | 1e-158 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A2T8IK72 | 0.0 | A0A2T8IK72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03208.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-39 | TCP family protein |