PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000001G3420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 199aa    MW: 21014.9 Da    PI: 11.3573
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000001G3420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1072.9e-33551467105
              TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.....eaesssssasnsssgkaaksa 94 
                        ++ h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c     +               a++  
  PH01000001G3420  55 GGKDQHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapsT--------T-----TASRLV 135
                      56999******************************************************988884444222211........1.....122222 PP

              TCP  95 akskksqksaa 105
                       k+ +++++a 
  PH01000001G3420 136 GKRPRQDHEAP 146
                      22222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.9E-2955141IPR005333Transcription factor, TCP
PROSITE profilePS5136925.74756110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042752Biological Processregulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MASRDAATFQ VHRPMAMPTP TPMSLPQPMT MPFTSVPADA VVPAPRKAGA GAAQGGKDQH  60
SKVNGRGRRV RMPIVCAARV FQLTRELGLK SDGQTIEWLL RQAEPSILAA TGSGTTPAVF  120
SCSSAPSTTT ASRLVGKRPR QDHEAPSFWE ALQPSRPVAW GLSPSQEAQA YASVAQGHHL  180
NLLSALSGAA RRPEESSR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00499DAPTransfer from AT5G08330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000001G3420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647081e-132AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBankAL6630191e-132AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149601e-132AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-132CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552301e-132CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
GenBankCT8317191e-132CT831719.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635777.12e-92transcription factor TCP21
TrEMBLA0A3B6C9W34e-98A0A3B6C9W3_WHEAT; Uncharacterized protein
TrEMBLA0A446MIR84e-98A0A446MIR8_TRITD; Uncharacterized protein
STRINGTraes_2BL_4B6057E06.16e-99(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-36TCP family protein