PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01099.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 343aa    MW: 39899.7 Da    PI: 6.8006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01099.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.7e-55161501129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++        ++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Pahal.J01099.1  16 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcrlggPGEEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 109
                     69****************************.99**************953655542233677********************************* PP

             NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     k+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Pahal.J01099.1 110 KPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 150
                     ****9856777****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-617170IPR003441NAC domain
PROSITE profilePS5100560.32316170IPR003441NAC domain
PfamPF023651.4E-2817149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGMSSTQAAQ TPQQLVPPGF RFHPTDEELV DYYLRKKVAS RRIDLNVIKD VDLYKIEPWD  60
LQEKCRLGGP GEEEQNEWYF FSHKDKKYPT GTRTNRATAA GFWKATGRDK PIYANKQRQL  120
VGMRKTLVYY KGRAPNGHKS DWIMHEYRLE TNENGPPQEE GWVVCRVFKK RLPTTRRESD  180
HDAPCWYVDE DEPFMHDLNS PMSRMPPHHA MPQLQEQHLQ MLNNTYKREL KLQFQMPSHH  240
VLNTIPHELE SPPFHSLLVS PDHQTNLHHA HHQHVQLMEH AVDQVTDWRV LDKFVASQLS  300
HDATKGVDYT DEGDIIQVNE KQEVATDYAS TSTSSSQVDP WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5011711169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750910.0KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810695.10.0NAC domain-containing protein 105-like
SwissprotQ9FWX21e-109NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2S3HMH80.0A0A2S3HMH8_9POAL; Uncharacterized protein
STRINGPavir.Da02426.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.12e-92Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]