PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 297aa    MW: 31976.8 Da    PI: 6.9543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00659.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.57.2e-42211531128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     lppG+rF Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P +L++   +++  ++++w+fF++r++++ +g r+ r+t +gyWkatg+   
  Pahal.J00659.1  21 LPPGYRFYPTEEELLGFYLRHRLAGTRAQVEHFIPVVDIYSYHPAQLQAmagAANVgDKEQWFFFCPRAERELSGGRPARTTPTGYWKATGSPSY 115
                     79****************************999**************95355222335669********************************** PP

             NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+s+  ++++g k+t+vfy+grap+g+kt+W m+ey++
  Pahal.J00659.1 116 VYSApASRVIGEKRTMVFYEGRAPTGTKTRWKMNEYKA 153
                     ***988999***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-4718182IPR003441NAC domain
PROSITE profilePS5100547.86421182IPR003441NAC domain
PfamPF023657.7E-2222152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MLLQTRMGSG RSSGSDHDPV LPPGYRFYPT EEELLGFYLR HRLAGTRAQV EHFIPVVDIY  60
SYHPAQLQAM AGAANVGDKE QWFFFCPRAE RELSGGRPAR TTPTGYWKAT GSPSYVYSAP  120
ASRVIGEKRT MVFYEGRAPT GTKTRWKMNE YKAVAADDAP PPAGAPAVRL RNEFSVCRVY  180
TSNGTLRSFD RRPLNPPAGG GLDQAAAHRC QQQEALLVPP PPPPASQMAA VDAVAASNGQ  240
SSEHSHGSPS SSGSLGVVVD GAEDAAAAID WDALIPPVDF LRFSVDDLSH VVWPPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-3171841170Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828030.10.0NAC domain-containing protein 90-like isoform X3
SwissprotQ9FMR33e-60NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2S3ICK20.0A0A2S3ICK2_9POAL; Uncharacterized protein
STRINGPavir.Ha01768.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-63NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]