PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03350.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 352aa    MW: 38890.3 Da    PI: 4.9112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03350.13genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.83.2e-172213110128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkgelvgl 102
                      +deelv ++L+++ ++++l+  +v+  +d   v+P+ +        + wy   + d++ + + +++ r++k+gyWk+  +  +v + +   +g+
  Pahal.I03350.13  22 SDEELV-RFLAERKAEDPLPQ-DVLVGLDFSLVDPRIFT------VDLWYLCWSDDQQPNnSAENSIRKAKNGYWKHVESC-KVPT-SIGIMGM 105
                      79****.99999999999999.99************996......34576444444333314556678999*****98775.5555.5778*** PP

              NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                      k +L fy+g+ap g++t Wvmhey++
  Pahal.I03350.13 106 KIILQFYEGHAPCGKRTGWVMHEYQV 131
                      ************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-2212141IPR003441NAC domain
PROSITE profilePS5100523.10713159IPR003441NAC domain
PfamPF023657.9E-1222131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCPPNPELKL AALNISIRDS WSDEELVRFL AERKAEDPLP QDVLVGLDFS LVDPRIFTVD  60
LWYLCWSDDQ QPNNSAENSI RKAKNGYWKH VESCKVPTSI GIMGMKIILQ FYEGHAPCGK  120
RTGWVMHEYQ VEQNDEANLP QVTADANEED VCSSKVQFEQ KPLSALDDID VIATGDYIEL  180
NDLLTSEASA STSENSSKRS MVSEDYFDSD AFLREILKGS NTTDGLNQDH KFSIAAPTKS  240
ANVVLSPSEQ GSMVLLLSCN LRGLVQFHDN NGMVPGTSHQ KPVPEGDRGE HSRQGFQQQG  300
PSMSSYFPSS HVKPSHSNSS SSSQSSMKSH KEQSTSKFGM IGKKYCCFGS F*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797458.10.0NAC domain-containing protein 40-like isoform X5
TrEMBLA0A2T7C8360.0A0A2T7C836_9POAL; Uncharacterized protein
STRINGPavir.Ib03017.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.16e-14NAC domain containing protein 102