PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02537.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 621aa    MW: 68877.6 Da    PI: 9.5521
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02537.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12e-104315111696
                     EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
              B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                     l + k++a +h  +  +s+ +tle   ++++W  k+  r+ s++ +l + W +Fv +n+++egD+v++  ++  ++ +++v v
  Pahal.I02537.1 431 LGITKEYALAHFPD--KSTSVTLEMpGKSKKWHPKFYKRNESRKNFLVGQWLDFVCDNHVQEGDIVLLLPTKGgRRSTFTVYV 511
                     66889999999756..4556777774577*******77999999**********************99965433555556665 PP

2B346.37.5e-155466172799
                     ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     ++++++++tl+l+   g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++ ++ ++ v ++rk
  Pahal.I02537.1 546 EEEPTTGQTLVLQC-GGKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKKeKKLTMAVYIIRK 617
                     56666777777655.9********99888877.5899**********************888999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.221416515IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-14417514IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-15418512No hitNo description
SuperFamilySSF1019361.43E-12418512IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.32419515IPR003340B3 DNA binding domain
PfamPF023621.6E-8431511IPR003340B3 DNA binding domain
SMARTSM010190.0028525618IPR003340B3 DNA binding domain
PfamPF023621.0E-12545617IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-14548617IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-13551617IPR015300DNA-binding pseudobarrel domain
CDDcd100175.10E-10552616No hitNo description
PROSITE profilePS5086312.351561618IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
APPPQAPDEE SGPQKPPQVI WASGWAHVAR PFGPCKCAAP RLSELLRARR RFVILGSWKV  60
AAAVGGKHEW FCYECLQKQS EITCVRSLEK VPSERPPSHA HFGSIVHQPI TKRVESTRDA  120
GPWKNRKSKS FVTIYASLNK NYSSQKKRTK NNSNMRPMGN CTNRGRIDKI SAHTSAKASY  180
SCEIIETESA KSNNGNNQQV DHENPAELGN SVLEKPRGKS NSMKDSGGNH DNQTNQHASV  240
GCKNMEVKSV KDKETVVAAD QNKYGAVGSL RNSMDKSEVH GDSNSNSNII DGLMPEREKE  300
EVRFQLDYRA KCELPQRSMA ANVPQLPTLQ NDAVEKVTLY SPNDGCEEVF SCRGIKSIPS  360
VRERSVDSVD ISSISQHDTT EASESSVRFT EHQKGSSCRR GKTLEMAAAS SSSEESATMR  420
KTSVEPPGPY LGITKEYALA HFPDKSTSVT LEMPGKSKKW HPKFYKRNES RKNFLVGQWL  480
DFVCDNHVQE GDIVLLLPTK GGRRSTFTVY VLHETATHSR GGAGFQRVGS CPGGSTTKMA  540
SEVHIEEEPT TGQTLVLQCG GKTWEAKMMF HNGRRWFING GWPNFARGNG LRVGDICLFE  600
LKKKEKKLTM AVYIIRKEQF *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797622.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A3L6SFS40.0A0A3L6SFS4_PANMI; Uncharacterized protein
STRINGPavir.Ib03962.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172