PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02465.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LSD
Protein Properties Length: 136aa    MW: 14194.3 Da    PI: 8.8289
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02465.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.54.5e-13630125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+Y+r A  VRC++C+tV
  Pahal.I02465.3  6 CGGCRTLLMYTRSADTVRCSCCNTV 30
                    ************************9 PP

2zf-LSD146.36.7e-154468125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg C+t+L+YP+GA sV+Ca+C+++
  Pahal.I02465.3 44 CGRCQTTLMYPYGAHSVKCAICNHI 68
                    ***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.5E-15333IPR005735Zinc finger, LSD1-type
PfamPF069435.3E-11630IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-114169IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-134468IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAQLICGGCR TLLMYTRSAD TVRCSCCNTV NLVRPVNNIA HVNCGRCQTT LMYPYGAHSV  60
KCAICNHITT TGVNTVAPTP SARPASNGSS YSTSSTSVPK SQPQNVTVVV ENPMTVDDKG  120
KLVSNVVVGV TTGKN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9764861e-139EU976486.1 Zea mays clone 895962 zinc finger protein LSD2 mRNA, complete cds.
GenBankEU9750491e-139EU975049.1 Zea mays clone 466017 zinc finger protein LSD2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982348.11e-88PREDICTED: protein LOL3-like
SwissprotQ6ASS25e-73LOL3_ORYSJ; Protein LOL3
TrEMBLK4AE781e-88K4AE78_SETIT; Uncharacterized protein
STRINGSi037185m3e-88(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-41LSD family protein