PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02284.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 411aa    MW: 44014.7 Da    PI: 7.0509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02284.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-15213259455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR++iN++f eL +++P++     kK++Ka+iL  A++Y+k+Lq
  Pahal.I02284.1 213 DHIIAERKRREKINQRFIELSTVIPSL-----KKMDKATILSDATKYVKELQ 259
                     699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18213268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-13213259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17213271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-15214263No hitNo description
SMARTSM003531.3E-15215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.162327403IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MIHLSVTVCK LSFSPELHII YSNYGRERAP LMDLRYTAKL RTGIRMEEDS SLFMQWAMDT  60
LRHERPVAGA ISNDCSEATF PSLQALREAS HAAEMVQELI SAAPANSWSS GDDTTDGSSG  120
GNNSAGAAMD HDAWPPTPNS ARRAPSRSGS GTNLPVSWNF GAAASALPGS DGMLAAAEAA  180
PTRRPPDIVC RSPPTRRAGA KGAGSMSTPY AQDHIIAERK RREKINQRFI ELSTVIPSLK  240
KMDKATILSD ATKYVKELQE KLRGLEADGS SNGRSIVKTV VLVKRPCLHA AAKPDEDGSP  300
LSASSAAPAV RKQLPEIEAR FSDKSVMVRI NCEDGKGVAV KLLTEVEELR LSITHANVMP  360
FPAGTLIITI TAKVEEGFTV TAEEIVGRLN SALLHQHNSS CNSTDDETGN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRE
2218223RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982204.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLB4FS751e-170B4FS75_MAIZE; BHLH transcription factor
STRINGGRMZM2G120021_P011e-169(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-39bHLH family protein