PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 345aa    MW: 38707.4 Da    PI: 6.9368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01503.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51361642128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+
  Pahal.I01503.1  36 LPGFRFHPTDEELVTFYLRRKVARKPLSI-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSA 129
                     69***************************.89***************556667899*************************************99 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Pahal.I01503.1 130 tsSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164
                     888899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-5635191IPR003441NAC domain
PROSITE profilePS5100555.9335191IPR003441NAC domain
PfamPF023653.9E-2537164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVAKEFGREV ISMDKVKTDG EALIAAGDEE EDDVVLPGFR FHPTDEELVT FYLRRKVARK  60
PLSIEIIKEM DIYKHDPWDL PKASTAGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPIYSAT SSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPAATA ANSSPSMQEA  180
EVWTICRIFK RNITYKRQQP QQVWRQPVAT GTCLPPADSS SNTGSFESDG GDEYMNCLPA  240
AAPSVPRQHH FSNQINMLNG GGGGGFFRDS VHSHQQFQGQ WFNSLPAPAI EQKPQLNSPA  300
TTIAFHQNDQ SLAANDCYKD GYWDEIARFM EVNDPAVFYD CRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-483719219166NO APICAL MERISTEM PROTEIN
1ut4_B1e-483719219166NO APICAL MERISTEM PROTEIN
1ut7_A1e-483719219166NO APICAL MERISTEM PROTEIN
1ut7_B1e-483719219166NO APICAL MERISTEM PROTEIN
3swm_A1e-483719222169NAC domain-containing protein 19
3swm_B1e-483719222169NAC domain-containing protein 19
3swm_C1e-483719222169NAC domain-containing protein 19
3swm_D1e-483719222169NAC domain-containing protein 19
3swp_A1e-483719222169NAC domain-containing protein 19
3swp_B1e-483719222169NAC domain-containing protein 19
3swp_C1e-483719222169NAC domain-containing protein 19
3swp_D1e-483719222169NAC domain-containing protein 19
4dul_A1e-483719219166NAC domain-containing protein 19
4dul_B1e-483719219166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555791e-180BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds.
GenBankHQ8586891e-180HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795725.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-85NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2S3IHK90.0A0A2S3IHK9_9POAL; Uncharacterized protein
STRINGPavir.J26531.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]