PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01275.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 298aa    MW: 31953.5 Da    PI: 5.405
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01275.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.57.5e-0881417127
             NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk....rknratksgy.Wkat 86 
                     F+P+d+      L +++++ +++l ++++++d++++ P dL +             + +  w f+++++ k+a+gk    r++ ++ +g+ W++ 
  Pahal.I01275.1   8 FRPRDDASSI-ALLRSLRSGDVDL-SFVHRADVCSAAPADLVAnlepvpgtdlDQGGYNAIWLFYCPKRFKNAQGKpsghRQRAIAGDGTcWHSE 100
                     7788766553.4667788888888.88**************744778887754222344589******99999655444266666666655**** PP

             NAM  87 gkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                        k+v+  +     +   L +     g++++ ++  W+m ey 
  Pahal.I01275.1 101 AGPKPVKGLD---GATLSNLSYGrkeGGSSRSFNRMGWCMTEYD 141
                     ******8844...4566788887443357777889********5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.2132161IPR003441NAC domain
SuperFamilySSF1019411.26E-138161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSAEDGSFRP RDDASSIALL RSLRSGDVDL SFVHRADVCS AAPADLVANL EPVPGTDLDQ  60
GGYNAIWLFY CPKRFKNAQG KPSGHRQRAI AGDGTCWHSE AGPKPVKGLD GATLSNLSYG  120
RKEGGSSRSF NRMGWCMTEY DDKHGGGGSG GDHVLCKIYR SSSSLAKAGK SKPPTTQRSS  180
GCKRKATGDE PQARPTKTSH KQACAGVDQE EFLLTDQQMA IPEPESLLPT EEEQFQDNTL  240
FTFQELLGGP GYGEYYGVCS PDTQFTMDEM FSRSSGSCSM PTAMAPLDAG FFEGLAF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463549.15e-51uncharacterized protein LOC8079646
TrEMBLA0A2S3IGP00.0A0A2S3IGP0_9POAL; Uncharacterized protein
STRINGPavir.J03710.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632