PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 269aa    MW: 30313.4 Da    PI: 6.5203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00959.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.3e-17151101100
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l     + +  l+lp kfa++ g    ++ +l+l   e    W+v++  + k+g ++l++GWk+F++a++L++g  +vF++d+   + l+v
  Pahal.I00959.1  15 FFKIL--LPGMYEEALRLPAKFARDLGAR--RDLKLRLAGgEMMPLWDVEVFADEKRGDMYLGRGWKKFARAHDLRDGYLLVFRYDD-GAAALTV 104
                     78888..444555569*******999866..666788887555599*****99********************************87.77779** PP

                     EEE-SS CS
              B3  95 kvfrks 100
                     +vf++s
  Pahal.I00959.1 105 TVFDRS 110
                     ***985 PP

2B343.55.7e-141592331287
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     +++ l +p +f ++hg+  +++++l+     grsW+v+l+   r  ++r+ ++ GW +F+ +ngL++gD++ F+++++
  Pahal.I00959.1 159 QNQYLNVPVEFQDAHGYARRRQVELR---MGGRSWSVNLKRgkRVLGDRTAFKYGWHQFCVDNGLEVGDTCFFTVIRE 233
                     6778999********99988876666...478*******554444455599***********************8864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-1713112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.61913110IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-1714112IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.7E-1515110IPR003340B3 DNA binding domain
CDDcd100172.93E-2015108No hitNo description
PfamPF023625.3E-1415109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-23142260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-15144234IPR015300DNA-binding pseudobarrel domain
CDDcd100175.50E-12145234No hitNo description
SMARTSM010190.0089146240IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547148263IPR003340B3 DNA binding domain
PfamPF023624.6E-11159233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEEEMAGLSL GDSEFFKILL PGMYEEALRL PAKFARDLGA RRDLKLRLAG GEMMPLWDVE  60
VFADEKRGDM YLGRGWKKFA RAHDLRDGYL LVFRYDDGAA ALTVTVFDRS TCRKQYVHAG  120
AAGGGKASRG AGAGRLSLAI AEPSHFAVSL RQCNLGTKQN QYLNVPVEFQ DAHGYARRRQ  180
VELRMGGRSW SVNLKRGKRV LGDRTAFKYG WHQFCVDNGL EVGDTCFFTV IREGACVDDD  240
DEEWEDEWED DEHVLKVEVR KKNGMMLT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.10.0B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.10.0B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q265e-89Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A2S3IT120.0A0A2S3IT12_9POAL; Uncharacterized protein
STRINGPavir.Ia04671.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]