PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02277.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 184aa    MW: 18819.8 Da    PI: 10.9354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02277.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-113382154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +r+a  e+Er RR+++   ++eL  llP +     ++  Ka iLe+A+ Y+  L
  Pahal.H02277.1 33 QRQAMVEIERARRRHMSRLYAELGALLPDL----PPRAPKARILEEAIAYVGAL 82
                    699999***********************6....389*************8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-113191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-103191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.0843282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.38E-93283No hitNo description
PfamPF000102.4E-83382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-83888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00259127178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAAEHPLALS LAGGRTKGSP AGTTTVALAP PEQRQAMVEI ERARRRHMSR LYAELGALLP  60
DLPPRAPKAR ILEEAIAYVG ALRGTVAKLE APGAVEGAGR RTAAVAAEVL AAEKASCFAA  120
RLPAARRPGA LTRVLEVFRR YGVPVLAATV TSNAGEAAVT VTTGAVAPSV VEGIKADISR  180
SIA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620183.14e-21PREDICTED: uncharacterized protein LOC107278004
TrEMBLK3XRF21e-74K3XRF2_SETIT; Uncharacterized protein
STRINGSi004494m3e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-10bHLH family protein