PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01533.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 325aa    MW: 35476.8 Da    PI: 7.325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01533.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12144191355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++   f  L +++P +     +K +K++iL  +++Y+k+L+
  Pahal.H01533.1 144 QEHVAAERKRREKMQRQFVALATMVPDL-----TKTDKISILGSTIQYVKQLE 191
                     5799***********************9.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-15145203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-11146195No hitNo description
SMARTSM003531.3E-12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKEGNPRKNL KDQKVMDELN QWNSESSHPE PDDQDELAYM YQQQEGHAGM QQLFQDPHPR  60
HHTLAMSGFQ RFGSASALPN LSFRGAVAAV KNEQGQPSSS SILSFGGLPP VARTLTFSGG  120
EDWPNVAVEG VPPERRSRSH LSTQEHVAAE RKRREKMQRQ FVALATMVPD LTKTDKISIL  180
GSTIQYVKQL EEKVKTLEKQ SARRTAASEY TGSEDKGHVS SADTQQASGP SGSTTRGVGS  240
SIPTVEASIH DDTVLLKICC QRRSGVLVMI ISELESLGLS IINTSVFPFS NPYFSINITA  300
KIGEGFSTTV ELVKNLTTAL RGFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154ERKRRE
2150155RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987096.21e-106PREDICTED: transcription factor bHLH25-like
TrEMBLK3ZLF01e-109K3ZLF0_SETIT; Uncharacterized protein
STRINGSi027407m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-32bHLH family protein