PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01257.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 617aa    MW: 65222.9 Da    PI: 6.472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01257.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.61.4e-1182215902374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 
                     v +L++cA+ ++++++ +a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++l++  pp+e ++    ++ ++al++++ ++Pi++f 
  Pahal.H01257.1 221 VVALTACADSLAARNHDAANYYLARLGEMASPAGpTPMHRVAAYFAEALALRVVRTWPHLFDVTPPRELTDGAvGDDDATALRILNAITPIPRFL 315
                     5689****************************************************************9988878999***************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+    s++el+etg rL ++A++lg+ fef++ v++rled+
  Pahal.H01257.1 316 HFTLNERMLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLATRAIPPAHVRITGVGE----SRQELQETGARLGRVAAALGLAFEFHA-VVDRLEDV 405
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283
                     +l++L+vk+gE++aVn+vl  hrll++++  +    ++L l +s+ + ++ + e+e  +ns+++ +rf++al+yy+a fd++ +a+l+ +s +r+
  Pahal.H01257.1 406 RLWMLHVKRGECVAVNCVLTAHRLLRDDTGAAL--ADFLGLARSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVdAAGLSDASPARV 498
                     *************************87777666..89*********************************************9999********* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                     k E++ ++rei+n+va e a+r+erhe+++ W++r+ee GF+++ +++++a+qa+++ r+++   y+v+ +   + l+l W d+p+++vSaW+
  Pahal.H01257.1 499 KAEEM-FAREIRNAVAFEDADRFERHESFAGWQRRMEEGGFQNAGIGDREATQARMIARMFAPGNYSVQAQgdGEGLTLRWLDQPMYTVSAWT 590
                     *****.********************************************************555*999554367788**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.769194568IPR005202Transcription factor GRAS
PfamPF035145.0E-116221590IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR SNRSDGGGAP RVAAGDARNG GGGATCSFRA  60
HPAPPVTQAV SWGAKPEPGG NGAGGVWERS SRAVKRAHEE GAGEEYGGPV VRAKRTKMGG  120
DGDEVWFHQP IAGTVQAAGG GEGEEPEEEK VFLVPSAAAF PHAGPSLAAA KKEEFSKSPS  180
NSPASSGGTD GGSSAVPPPE QHARNGVPAP GAAGREAMEL VVALTACADS LAARNHDAAN  240
YYLARLGEMA SPAGPTPMHR VAAYFAEALA LRVVRTWPHL FDVTPPRELT DGAVGDDDAT  300
ALRILNAITP IPRFLHFTLN ERMLRAFDGH DRVHVIDFDI KQGLQWPGLL QSLATRAIPP  360
AHVRITGVGE SRQELQETGA RLGRVAAALG LAFEFHAVVD RLEDVRLWML HVKRGECVAV  420
NCVLTAHRLL RDDTGAALAD FLGLARSTGA AILLLGEHED ALNSGRWEAR FARALRYYAA  480
AFDAVDAAGL SDASPARVKA EEMFAREIRN AVAFEDADRF ERHESFAGWQ RRMEEGGFQN  540
AGIGDREATQ ARMIARMFAP GNYSVQAQGD GEGLTLRWLD QPMYTVSAWT PVGDGGGGGS  600
TVSASVSTTA SHSQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-442205894374GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964401.10.0PREDICTED: scarecrow-like protein 28
TrEMBLK3Y2010.0K3Y201_SETIT; Uncharacterized protein
STRINGSi008220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-121GRAS family protein