PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01205.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 438aa    MW: 45926.2 Da    PI: 5.1286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01205.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11248292554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + Er+RR+++N++f++Lr+llP++      K +K ++L  A  ++k L
  Pahal.H01205.1 248 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLVNAASFLKTL 292
                     7899*********************9.....6899999999999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16241309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.608243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15248309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-9248293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-11248297No hitNo description
SMARTSM003539.9E-12249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDEVWCGLDL QQLQAGDPLA GLHDHDPFWP ALADCTASFL AADTACFGVA DIDLSGGSAS  60
GKAAAVDGMD TSGFFAEDGR HHHLMHQEQQ PVYSSSSLSS KRSLSVDSGG SSSTFFQLDD  120
ASLAAATAAG LFSSPSHSHP AAAAAPQDPF AAGEDEALMR AMMAVISSAS PSSSESSSPL  180
LSQDYTTAAQ PAVVQPRNAS HVTVRSSSLA VGPERTTSLT SAAAGGRQQE EDAKAAAAGS  240
NSSSQVYHMM SERKRREKLN DSFHTLRSLL PPCSKKDKTT VLVNAASFLK TLEAQVSELE  300
EKNTKLERYV PREGAGASAA AAAHRRAKVS ISRAGPDERQ VSLMVMVMVE CDIVDLVLHV  360
LEYLRWMSGV SVLSVDADTY SPQALLKARA NIKLQIMDGD CWDEALFHEA MTKAVHEATS  420
SPSSSSCAAP APLVAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256ERKRRE
2252257RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969032.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLK3XHX20.0K3XHX2_SETIT; Uncharacterized protein
STRINGSi001494m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-23bHLH family protein