PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00785.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 269aa    MW: 29327.4 Da    PI: 9.4068
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00785.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.85.7e-421002321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     lppG+rF Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P +L++   +++  ++++w+fF++r++++ +g r+ r+t +gyWkatg+   
  Pahal.H00785.2 100 LPPGYRFYPTEEELLGFYLRHRLAGTRAQVEHFIPVVDIYSYHPAQLQAmagAANVgDKEQWFFFCPRAERELSGGRPARTTPTGYWKATGSPSY 194
                     79****************************999**************95355222335669********************************** PP

             NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+s+  ++++g k+t+vfy+grap+g+kt+W m+ey++
  Pahal.H00785.2 195 VYSApASRVIGEKRTMVFYEGRAPTGTKTRWKMNEYKA 232
                     ***988999***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-4597237IPR003441NAC domain
PROSITE profilePS5100544.713100254IPR003441NAC domain
PfamPF023656.0E-22101231IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAVAMHLQLL QSFANLLQSP SPSSTVCERG SYYRTPSPAG SINTARVLAN LQAITPGQGD  60
IVSHHTDHQF VGGKVAIGIM LLQTRMGSGR SSGSDHDPVL PPGYRFYPTE EELLGFYLRH  120
RLAGTRAQVE HFIPVVDIYS YHPAQLQAMA GAANVGDKEQ WFFFCPRAER ELSGGRPART  180
TPTGYWKATG SPSYVYSAPA SRVIGEKRTM VFYEGRAPTG TKTRWKMNEY KAVAADDAPP  240
PAGAPAVRVR TYVLHVCDLL VNLLVVHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-29862541162Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828028.11e-127NAC domain-containing protein 90-like isoform X1
SwissprotQ9M2906e-53NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLA0A2S3ICI80.0A0A2S3ICI8_9POAL; Uncharacterized protein
STRINGSi026707m1e-95(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.15e-54NAC domain containing protein 61