PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01894.7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 366aa    MW: 39971.1 Da    PI: 5.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01894.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27e-14173220355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     r+h + Er+RR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+Lq
  Pahal.G01894.7 173 RNHVMSERKRREKLNEMFLVLKSLVPSiY------KVNKASILAETIAYLKELQ 220
                     5799***********************77......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.497170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11173220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-18173236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-15173224No hitNo description
Gene3DG3DSA:4.10.280.103.3E-17174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQFPACSQEP SSSPSANETG KAADIIVFED LDHNAMEEMI AGGQELDESE SLSNATLEHI  60
TKEIDEFYSL CEEMDVQPLE DCWIMDGSFE VPSPPQPAAG ASTHDAATSS TPVRGSRATS  120
FTAWTRSASD SGEVAVLVIE EPQKLLKKVV AGGAWASNGG GDTTRTAKES GIRNHVMSER  180
KRREKLNEMF LVLKSLVPSI YKVNKASILA ETIAYLKELQ RRVHELESSR EPISRPSETR  240
RLTKRHDDGS ARKKVSAGSK RKGSELGGDM VRDEHPWALS KDGASNVTVT VSDKDVLVEV  300
QCRWEELLMT RVFDAIKNLH LDVLSVQASA PDGFMGLKIR AQFASSAAVV PWMISEALRK  360
AIGKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX607069e-87X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression.
GenBankMZEREGG9e-87M26227.1 Zea mays Lc regulatory protein mRNA, complete cds.
GenBankKJ7268009e-87KJ726800.1 Zea mays clone pUT3027 bHLH transcription factor (bHLH1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970877.10.0PREDICTED: anthocyanin regulatory R-S protein-like
SwissprotP135261e-146ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLK3XG260.0K3XG26_SETIT; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-34bHLH family protein