PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01894.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 480aa    MW: 52353.2 Da    PI: 6.5212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01894.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13287334355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     r+h + Er+RR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+Lq
  Pahal.G01894.5 287 RNHVMSERKRREKLNEMFLVLKSLVPSiY------KVNKASILAETIAYLKELQ 334
                     5799***********************77......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-1066112IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.497284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.22E-16287338No hitNo description
SuperFamilySSF474591.44E-17287350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11287334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17288345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MRGATGCRAG ASPATNMSGC ATRNSPTAKP SPARSWRRYV SAFSVSVYRL PFVFVINRSQ  60
SLLAHHELRR FEQGASIQTI VCIPLMSGVL ELGTTDPVVE DPDLVSRATA SFWEMQFPAC  120
SQEPSSSPSA NETGKAADII VFEDLDHNAM EEMIAGGQEL DESESLSNAT LEHITKEIDE  180
FYSLCEEMDV QPLEDCWIMD GSFEVPSPPQ PAAGASTHDA ATSSTPVRGS RATSFTAWTR  240
SASDSGEVAV LVIEEPQKLL KKVVAGGAWA SNGGGDTTRT AKESGIRNHV MSERKRREKL  300
NEMFLVLKSL VPSIYKVNKA SILAETIAYL KELQRRVHEL ESSREPISRP SETRRLTKRH  360
DDGSARKKVS AGSKRKGSEL GGDMVRDEHP WALSKDGASN VTVTVSDKDV LVEVQCRWEE  420
LLMTRVFDAI KNLHLDVLSV QASAPDGFMG LKIRAQFASS AAVVPWMISE ALRKAIGKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297ERKRRE
2293298RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX607061e-86X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression.
GenBankMZEREGG1e-86M26227.1 Zea mays Lc regulatory protein mRNA, complete cds.
GenBankKJ7268001e-86KJ726800.1 Zea mays clone pUT3027 bHLH transcription factor (bHLH1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970877.10.0PREDICTED: anthocyanin regulatory R-S protein-like
SwissprotP135261e-167ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLK3XG260.0K3XG26_SETIT; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.38e-34bHLH family protein