PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00898.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 166aa    MW: 17197.7 Da    PI: 8.5168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00898.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.4e-1155134792
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     +s+v+   ++v+p++ a       + +   t  + +grsW +++  +++++   l++GW++F+ + gL+ gD +v++l++   ++ 
  Pahal.G00898.1  55 KSHVHPPFQVVVPRSLAPFLPAA-TAP--AT-LSWRGRSWGMRF--TGGRQIQRLEAGWRGFALDAGLRLGDACVLELVDGGPERV 134
                     56666666666666666444222.222..22.34689*******..9999999************************987544433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-1346133IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1246142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-847135No hitNo description
PROSITE profilePS5086310.53249144IPR003340B3 DNA binding domain
PfamPF023621.6E-852135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASDAALKGK SAASSSAEQS GEAAAAAADG PDDHQLQPGI LPLLGKPYFA CIMCKSHVHP  60
PFQVVVPRSL APFLPAATAP ATLSWRGRSW GMRFTGGRQI QRLEAGWRGF ALDAGLRLGD  120
ACVLELVDGG PERVVFRAQV LRADIPAAIR GRAGGDTSAS PILID*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825273.11e-114B3 domain-containing protein Os04g0386900-like
SwissprotQ7XLP41e-69Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A2S3I5Y21e-113A0A2S3I5Y2_9POAL; Uncharacterized protein
STRINGPavir.Gb01948.1.p8e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]