PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01978.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 121aa    MW: 12560.3 Da    PI: 8.2607
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01978.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.68.1e-302982357
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    +vrY eC++NhAas+GghavDGC+Ef+++ ge+gtaaal+CaACgCHR+FHRr  
  Pahal.F01978.1 29 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEDGTAAALRCAACGCHRSFHRRVA 82
                    68**************************8.999********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576126No hitNo description
PfamPF047704.8E-293081IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-243180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.4693281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-133878IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MMKRMVILRR CHPPPPPPAA VLMGGCGGGV RYGECRRNHA ASMGGHAVDG CREFLAEGED  60
GTAAALRCAA CGCHRSFHRR VARRCCCFFC CDDDAAAAGA RWGGGDGCSP ESSASSTTPR  120
*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270082e-73KJ727008.1 Zea mays clone pUT3984 ZF-HD transcription factor (ZHD19) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821999.13e-80mini zinc finger protein 4-like
SwissprotQ0J5F89e-35MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBLA0A2S3I2R98e-79A0A2S3I2R9_9POAL; Uncharacterized protein
TrEMBLA0A2T7D7Q28e-79A0A2T7D7Q2_9POAL; Uncharacterized protein
STRINGPavir.Fa00896.1.p2e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.16e-19mini zinc finger 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]