PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 233aa    MW: 24438 Da    PI: 5.2739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01808.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-172473255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  Pahal.F01808.1 24 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 73
                    7******99.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.52E-182484No hitNo description
SuperFamilySSF541711.7E-182483IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-272484IPR001471AP2/ERF domain
SMARTSM003802.2E-322488IPR001471AP2/ERF domain
PfamPF008472.8E-102473IPR001471AP2/ERF domain
PROSITE profilePS5103221.8652482IPR001471AP2/ERF domain
PRINTSPR003671.5E-82536IPR001471AP2/ERF domain
PRINTSPR003671.5E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDDGAAGASR SDGEGSPRPP AERRYKGVRL RKWGRWVSEI RMPNSRERIW LGSYESAEKA  60
ARAFDAAAVC LRGSRAGSLN FPESPPNVRH IPGVLLTPEQ IQAEAVRHAN QPTTSSPVAS  120
SASTAVSLSQ QAAAAGGASI DRTALSLPST CGGGAALAGS DDALDWSFMD TLPSMPASSA  180
GTTAGPHHIV PALDDFMYGS PHPVMPSSGE ASQDMIDGYD DHTFISDDLW RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-12182172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283821e-112KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822439.11e-168ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2S3I3771e-167A0A2S3I377_9POAL; Uncharacterized protein
STRINGPavir.Fb01602.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-24ERF family protein