PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01715.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 371aa    MW: 38854.2 Da    PI: 7.0208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01715.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09198245455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pahal.F01715.1 198 RHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 245
                     599***********************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17191261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-11192249No hitNo description
PROSITE profilePS5088815.478194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16197260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDSFAWAAVS QTPGLAGGGA VSDGRGGGLL PPMPGFQLPP PAGLERFSVD SGLVERAGRS  60
SCFGAANGTA TTASASNITL EGASRHRSKV AGGNSSVSGV HDEAATGDCS SGGPEPDSKN  120
MKRSNEDVLA TDQAKASNAS TDSANESSRS KGVKGEENGL AAASVVAGKR KRNGSKAPDE  180
EGEEYIHVRA RKGQATNRHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY  240
VQSLQRQVEF LSMKLAAVNP QLGLNIEGIL SKDLIRFPGA PPSAPIGFSL SQSGMVQEGV  300
HGVAGSNGFR TVMQGQLNER DSFREHVSQS LEQIPRALDG WFHNAGQTAY RAGIDPEHLS  360
IGPDQDAFHL *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973759.10.0PREDICTED: transcription factor bHLH49-like isoform X1
TrEMBLK3YNF21e-176K3YNF2_SETIT; Uncharacterized protein
STRINGSi015793m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.25e-52bHLH family protein