PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01658.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 227aa    MW: 24048.3 Da    PI: 10.2466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01658.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-142571354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+Y+++L
  Pahal.F01658.1 25 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRYVREL 71
                    79*************************9.....7****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-122072No hitNo description
SuperFamilySSF474596.67E-152178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5712271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-152274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-122571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-132877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVVTDGGVEG ERPAPAPAVR KERGRSHSEA ERKRRQRINA HLATLRTLVP SASRMDKAAL  60
LGEVVRYVRE LRGKASEAAE GVGAGVIPGE GDDVGVEEEE DDRWRPGGRR CGTGGLLGTG  120
AADGRLPPRR VRAWVCCADR PGLMADLGRA VRSVGNARPV RAEIATLDVC RDDDHVAAAA  180
TDKGGAVALS TLRAALRAVL LNREDHLAAA EGYKRPRFSA QIAKVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035ERKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822447.11e-143transcription factor AIG1-like
TrEMBLA0A2T8IHC41e-141A0A2T8IHC4_9POAL; Uncharacterized protein
STRINGPavir.J25149.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-12bHLH family protein