PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00577.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 304aa    MW: 32547.3 Da    PI: 6.859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00577.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09142189455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Pahal.F00577.1 142 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 189
                     8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-11136193No hitNo description
SuperFamilySSF474593.93E-17136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16138202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MADFSSHHSL HLKMPAALTN GHSPNLSSLL FYGQNHGQGA TANANAASGT AAAMAEDASL  60
ESSSAVVDTS PQGSASPMDR KRKATEDSAT LSSAHSKDCK QEGKSKRGKR SNKEAEDKST  120
TDDEAPKGYI HVRARRGQAT DSHSLAERVR RERISERMRM LQALVPGCDK VTGKALILDE  180
IINYVQSLQN QVEFLSMRIA SMSPVLYGFG LDSDGLHDHA QKMGGMFQEA LAMPGPVLSQ  240
ASPAPSQAII ETTSTTPFSL QGQGAISFSQ DNGSTYLMQQ AVGEPTRQEL LNQLVFNNMC  300
SFQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353770.0BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974028.10.0PREDICTED: transcription factor bHLH137-like
SwissprotQ93W886e-54BH137_ARATH; Transcription factor bHLH137
TrEMBLK3YIS00.0K3YIS0_SETIT; Uncharacterized protein
STRINGSi014139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-43bHLH family protein