PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00488.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 366aa    MW: 37653 Da    PI: 6.3754
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.42.2e-37651696110
             TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 
                      r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ +    ++ss+            
  Pahal.F00488.1  65 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSssspsslamvad 158
                     6999********************************************************77777333.33333333333333111111223333 PP

             TCP  89 .kaaksaakskksqksaasalnl 110
                      +            +s+a+ + +
  Pahal.F00488.1 159 gE------------ESSAKRRRK 169
                     21............111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.38167121IPR017887Transcription factor TCP subgroup
PfamPF036348.5E-3167162IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEAQAQHRAE EGEAAARQHA VGAGGVTAAA GVAMGAIPMH GFMVPKPEPV EYFGGMAVVR  60
SKPPPRNRDR HTKVEGRGRR IRMPAACAAR IFQLTRELGH KSDGETIRWL LQQSEPAIIA  120
ATGTGTVPAI ATTVDGVLRI PTQSSSSSSP SSLAMVADGE ESSAKRRRKL QPTRAAAGAS  180
PLATAAPAAY YPVIADPLLQ GTGGAAISVP SGLAPITTGP GAPQGLVPVF AVPAAGSPGG  240
GANRMIPQAT AVWMVPQPGA AAGGAAAQPT QFWAIQSAPQ LINLGGAQTA VFPTAVNVAD  300
FQHQQQQAST MSHSSNSAEQ HQLHLQHPGS GPHEQRRGGR SDVDHPEEDE DDDDEEPVSD  360
SSPEE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458660.0EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819925.10.0transcription factor PCF2-like
SwissprotA2YXQ11e-154PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-154PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2S3I4I00.0A0A2S3I4I0_9POAL; Uncharacterized protein
STRINGPavir.Fa00111.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-42TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]