PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00057.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LSD
Protein Properties Length: 160aa    MW: 16759.2 Da    PI: 8.9117
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00057.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD124.64.1e-08730124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    C+gC+ +L+Y rGA+ V+C+ C+t
  Pahal.F00057.1  7 CSGCKRVLQYRRGATGVCCPGCNT 30
                    ***********************9 PP

2zf-LSD123.87.5e-084668123
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                    CggC t+L Y rGA ++RC+ C 
  Pahal.F00057.1 46 CGGCFTMLVYNRGAANIRCPHCG 68
                    **********************7 PP

3zf-LSD1261.6e-0884106123
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                     Cg+Crt+L+YP+GA+ V C+ C 
  Pahal.F00057.1  84 CGHCRTTLAYPPGASTVGCPTCR 106
                     **********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.6E-8432IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-6730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.4E-94471IPR005735Zinc finger, LSD1-type
PfamPF069435.0E-94668IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-781110IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-884106IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MQDQLICSGC KRVLQYRRGA TGVCCPGCNT FTAANPSGPE MSELVCGGCF TMLVYNRGAA  60
NIRCPHCGRV NSTRSANQIG HLSCGHCRTT LAYPPGASTV GCPTCRCINP VRNNSSGGSA  120
RPAPSDARPQ TVLVENPKTL DEKGKLVSNV AVGVTSWKR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972942.11e-110PREDICTED: protein LOL4-like isoform X2
SwissprotQ84UR03e-79LOL4_ORYSJ; Protein LOL4
TrEMBLK3YJ621e-110K3YJ62_SETIT; Uncharacterized protein
STRINGSi014280m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.76e-40LSD family protein