PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04451.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 235aa    MW: 25404 Da    PI: 8.6595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04451.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12250455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +h ++Er+RR+++N+ +  Lr+l P +   + k+ + a++   A+++I++Lq
  Pahal.E04451.1  2 SHIAVERNRRRQMNDHLKVLRSLTPAL---YIKRGDQASVIGGAIDFIRELQ 50
                    89*************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.89E-12154No hitNo description
PROSITE profilePS5088814.684149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-13261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRSLTPALYI KRGDQASVIG GAIDFIRELQ QVLESLEARK  60
KRRSSASGGF SPSPTPSPRS HLALSSSSGG RGAATSSAGS STPSPPVLVV GNKHQQALAV  120
KELAACCNSP VADVEARISG ANVLLRTLSR RAPGQAARMV ALLEALHLEV LHLNISTMED  180
TVLHSFVLKI GLECQLSVED LAYEVQQTFV CFREQEEQQG HQLQENLMYS AMAI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269695e-81KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.11e-114PREDICTED: transcription factor MUTE
SwissprotQ9M8K63e-73MUTE_ARATH; Transcription factor MUTE
TrEMBLK3XR971e-110K3XR97_SETIT; Uncharacterized protein
STRINGSi004438m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.14e-39bHLH family protein